J6_2OTL_001

3D structure

PDB id

2OTL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Girodazole bound to the large subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

GC*GGAAC*GGAACAGAAAA*UGAUG*UACAG*CUAAACAC

Length

36 nucleotides

Bulged bases

2OTL|1|0|A|193, 2OTL|1|0|C|438

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

2OTL|1|0|G|41
2OTL|1|0|C|42
*
2OTL|1|0|G|149
2OTL|1|0|G|150
2OTL|1|0|A|151
2OTL|1|0|A|152
2OTL|1|0|C|153
*
2OTL|1|0|G|184
2OTL|1|0|G|185
2OTL|1|0|A|186
2OTL|1|0|A|187
2OTL|1|0|C|188
2OTL|1|0|A|189
2OTL|1|0|G|190
2OTL|1|0|A|191
2OTL|1|0|A|192
2OTL|1|0|A|193
2OTL|1|0|A|194
*
2OTL|1|0|U|202
2OTL|1|0|G|203
2OTL|1|0|A|204
2OTL|1|0|U|205
2OTL|1|0|G|206
*
2OTL|1|0|U|233
2OTL|1|0|A|234
2OTL|1|0|C|235
2OTL|1|0|A|236
2OTL|1|0|G|237
*
2OTL|1|0|C|433
2OTL|1|0|U|434
2OTL|1|0|A|435
2OTL|1|0|A|436
2OTL|1|0|A|437
2OTL|1|0|C|438
2OTL|1|0|A|439
2OTL|1|0|C|440

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain 1

50S ribosomal protein L37e

Chain M

50S ribosomal protein L15e