J6_2QA4_002

3D structure

PDB id

2QA4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

A more complete structure of the the L7/L12 stalk of the Haloarcula marismortui 50S large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UUUA*UUUG*CG*CGCC*GUCUAGCGAACC*GAUGACAGAAAA

Length

38 nucleotides

Bulged bases

2QA4|1|0|U|2117, 2QA4|1|0|A|2425, 2QA4|1|0|A|2465, 2QA4|1|0|A|2467, 2QA4|1|0|A|2468

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

2QA4|1|0|U|2115
2QA4|1|0|U|2116
2QA4|1|0|U|2117
2QA4|1|0|A|2118
*
2QA4|1|0|U|2276
2QA4|1|0|U|2277
2QA4|1|0|U|2278
2QA4|1|0|G|2279
*
2QA4|1|0|C|2292
2QA4|1|0|G|2293
*
2QA4|1|0|C|2315
2QA4|1|0|G|2316
2QA4|1|0|C|2317
2QA4|1|0|C|2318
*
2QA4|1|0|G|2421
2QA4|1|0|U|2422
2QA4|1|0|C|2423
2QA4|1|0|U|2424
2QA4|1|0|A|2425
2QA4|1|0|G|2426
2QA4|1|0|C|2427
2QA4|1|0|G|2428
2QA4|1|0|A|2429
2QA4|1|0|A|2430
2QA4|1|0|C|2431
2QA4|1|0|C|2432
*
2QA4|1|0|G|2459
2QA4|1|0|A|2460
2QA4|1|0|U|2461
2QA4|1|0|G|2462
2QA4|1|0|A|2463
2QA4|1|0|C|2464
2QA4|1|0|A|2465
2QA4|1|0|G|2466
2QA4|1|0|A|2467
2QA4|1|0|A|2468
2QA4|1|0|A|2469
2QA4|1|0|A|2470

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain 3

50S ribosomal protein L44E

Chain A

50S ribosomal protein L2P

Chain L

50S ribosomal protein L15P

Chain M

50S ribosomal protein L15e

Chain Q

50S ribosomal protein L21e