J6_2QEX_002

3D structure

PDB id

2QEX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Negamycin Binds to the Wall of the Nascent Chain Exit Tunnel of the 50S Ribosomal Subunit

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UUUA*UUUG*CG*CGCC*GUCUAGCGAACC*GAUGACAGAAAA

Length

38 nucleotides

Bulged bases

2QEX|1|0|U|2117, 2QEX|1|0|A|2425, 2QEX|1|0|A|2465, 2QEX|1|0|A|2467, 2QEX|1|0|A|2468

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

2QEX|1|0|U|2115
2QEX|1|0|U|2116
2QEX|1|0|U|2117
2QEX|1|0|A|2118
*
2QEX|1|0|U|2276
2QEX|1|0|U|2277
2QEX|1|0|U|2278
2QEX|1|0|G|2279
*
2QEX|1|0|C|2292
2QEX|1|0|G|2293
*
2QEX|1|0|C|2315
2QEX|1|0|G|2316
2QEX|1|0|C|2317
2QEX|1|0|C|2318
*
2QEX|1|0|G|2421
2QEX|1|0|U|2422
2QEX|1|0|C|2423
2QEX|1|0|U|2424
2QEX|1|0|A|2425
2QEX|1|0|G|2426
2QEX|1|0|C|2427
2QEX|1|0|G|2428
2QEX|1|0|A|2429
2QEX|1|0|A|2430
2QEX|1|0|C|2431
2QEX|1|0|C|2432
*
2QEX|1|0|G|2459
2QEX|1|0|A|2460
2QEX|1|0|U|2461
2QEX|1|0|G|2462
2QEX|1|0|A|2463
2QEX|1|0|C|2464
2QEX|1|0|A|2465
2QEX|1|0|G|2466
2QEX|1|0|A|2467
2QEX|1|0|A|2468
2QEX|1|0|A|2469
2QEX|1|0|A|2470

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain 3

50S ribosomal protein L44e

Chain A

50S ribosomal protein L2P

Chain L

50S ribosomal protein L15P

Chain M

50S ribosomal protein L15e

Chain Q

50S ribosomal protein L21e