J6_2ZJP_001

3D structure

PDB id

2ZJP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thiopeptide antibiotic Nosiheptide bound to the large ribosomal subunit of Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

GC*GGAAC*GGAGAAGAAAG*CGAUU*AUCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

2ZJP|1|X|A|200

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

2ZJP|1|X|G|44
2ZJP|1|X|C|45
*
2ZJP|1|X|G|156
2ZJP|1|X|G|157
2ZJP|1|X|A|158
2ZJP|1|X|A|159
2ZJP|1|X|C|160
*
2ZJP|1|X|G|191
2ZJP|1|X|G|192
2ZJP|1|X|A|193
2ZJP|1|X|G|194
2ZJP|1|X|A|195
2ZJP|1|X|A|196
2ZJP|1|X|G|197
2ZJP|1|X|A|198
2ZJP|1|X|A|199
2ZJP|1|X|A|200
2ZJP|1|X|G|201
*
2ZJP|1|X|C|208
2ZJP|1|X|G|209
2ZJP|1|X|A|210
2ZJP|1|X|U|211
2ZJP|1|X|U|212
*
2ZJP|1|X|A|239
2ZJP|1|X|U|240
2ZJP|1|X|C|241
2ZJP|1|X|A|242
2ZJP|1|X|G|243
*
2ZJP|1|X|C|439
2ZJP|1|X|U|440
2ZJP|1|X|A|441
2ZJP|1|X|A|442
2ZJP|1|X|A|443
2ZJP|1|X|U|444
2ZJP|1|X|A|445
2ZJP|1|X|C|446

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains

Chain 2

50S RIBOSOMAL PROTEIN L34