Loop J6_3CC2

3D structure

PDB id: 3CC2 (explore in PDB, NAKB, or RNA 3D Hub)
Description: The Refined Crystal Structure of the Haloarcula Marismortui Large Ribosomal Subunit at 2.4 Angstrom Resolution with rrnA Sequence for the 23S rRNA and Genome-derived Sequences for r-Proteins
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å

Loop

Sequence: UUUA*UUUG*CG*CGCC*GUCUAGCGAACC*GAUGACAGAAAA
Length: 38 nucleotides
Bulged bases: 3CC2|1|0|U|2117, 3CC2|1|0|A|2425, 3CC2|1|0|A|2465, 3CC2|1|0|A|2467, 3CC2|1|0|A|2468
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

3CC2|1|0|U|2115
3CC2|1|0|U|2116
3CC2|1|0|U|2117
3CC2|1|0|A|2118
*
3CC2|1|0|U|2276
3CC2|1|0|U|2277
3CC2|1|0|U|2278
3CC2|1|0|G|2279
*
3CC2|1|0|C|2292
3CC2|1|0|G|2293
*
3CC2|1|0|C|2315
3CC2|1|0|G|2316
3CC2|1|0|C|2317
3CC2|1|0|C|2318
*
3CC2|1|0|G|2421
3CC2|1|0|U|2422
3CC2|1|0|C|2423
3CC2|1|0|U|2424
3CC2|1|0|A|2425
3CC2|1|0|G|2426
3CC2|1|0|C|2427
3CC2|1|0|G|2428
3CC2|1|0|A|2429
3CC2|1|0|A|2430
3CC2|1|0|C|2431
3CC2|1|0|C|2432
*
3CC2|1|0|G|2459
3CC2|1|0|A|2460
3CC2|1|0|U|2461
3CC2|1|0|G|2462
3CC2|1|0|A|2463
3CC2|1|0|C|2464
3CC2|1|0|A|2465
3CC2|1|0|G|2466
3CC2|1|0|A|2467
3CC2|1|0|A|2468
3CC2|1|0|A|2469
3CC2|1|0|A|2470

Current chains

Chain 0: 23S RIBOSOMAL RNA

Nearby chains

Chain 3: 50S ribosomal protein L44E
Chain A: 50S ribosomal protein L2P
Chain L: 50S ribosomal protein L15P
Chain M: 50S ribosomal protein L15e
Chain Q: 50S ribosomal protein L21e

J6_3CC2_002