J6_3CCJ_002

3D structure

PDB id

3CCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Anisomycin resistant 50S Ribosomal Subunit: 23S rRNA mutation C2534U

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UUUA*UUUG*CG*CGCC*GUCUAGCGAACC*GAUGACAGAAAA

Length

38 nucleotides

Bulged bases

3CCJ|1|0|U|2117, 3CCJ|1|0|A|2425, 3CCJ|1|0|A|2465, 3CCJ|1|0|A|2467, 3CCJ|1|0|A|2468

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3CCJ|1|0|U|2115
3CCJ|1|0|U|2116
3CCJ|1|0|U|2117
3CCJ|1|0|A|2118
*
3CCJ|1|0|U|2276
3CCJ|1|0|U|2277
3CCJ|1|0|U|2278
3CCJ|1|0|G|2279
*
3CCJ|1|0|C|2292
3CCJ|1|0|G|2293
*
3CCJ|1|0|C|2315
3CCJ|1|0|G|2316
3CCJ|1|0|C|2317
3CCJ|1|0|C|2318
*
3CCJ|1|0|G|2421
3CCJ|1|0|U|2422
3CCJ|1|0|C|2423
3CCJ|1|0|U|2424
3CCJ|1|0|A|2425
3CCJ|1|0|G|2426
3CCJ|1|0|C|2427
3CCJ|1|0|G|2428
3CCJ|1|0|A|2429
3CCJ|1|0|A|2430
3CCJ|1|0|C|2431
3CCJ|1|0|C|2432
*
3CCJ|1|0|G|2459
3CCJ|1|0|A|2460
3CCJ|1|0|U|2461
3CCJ|1|0|G|2462
3CCJ|1|0|A|2463
3CCJ|1|0|C|2464
3CCJ|1|0|A|2465
3CCJ|1|0|G|2466
3CCJ|1|0|A|2467
3CCJ|1|0|A|2468
3CCJ|1|0|A|2469
3CCJ|1|0|A|2470

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain 3

50S ribosomal protein L44E

Chain A

50S ribosomal protein L2P

Chain L

50S ribosomal protein L15P

Chain M

50S ribosomal protein L15e

Chain Q

50S ribosomal protein L21e