J6_3CCQ_002

3D structure

PDB id

3CCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Anisomycin resistant 50S Ribosomal Subunit: 23S rRNA mutation A2488U

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UUUA*UUUG*CG*CGCC*GUCUAGCGAACC*GAUGACAGAAAA

Length

38 nucleotides

Bulged bases

3CCQ|1|0|U|2117, 3CCQ|1|0|A|2425, 3CCQ|1|0|A|2465, 3CCQ|1|0|A|2467, 3CCQ|1|0|A|2468

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3CCQ|1|0|U|2115
3CCQ|1|0|U|2116
3CCQ|1|0|U|2117
3CCQ|1|0|A|2118
*
3CCQ|1|0|U|2276
3CCQ|1|0|U|2277
3CCQ|1|0|U|2278
3CCQ|1|0|G|2279
*
3CCQ|1|0|C|2292
3CCQ|1|0|G|2293
*
3CCQ|1|0|C|2315
3CCQ|1|0|G|2316
3CCQ|1|0|C|2317
3CCQ|1|0|C|2318
*
3CCQ|1|0|G|2421
3CCQ|1|0|U|2422
3CCQ|1|0|C|2423
3CCQ|1|0|U|2424
3CCQ|1|0|A|2425
3CCQ|1|0|G|2426
3CCQ|1|0|C|2427
3CCQ|1|0|G|2428
3CCQ|1|0|A|2429
3CCQ|1|0|A|2430
3CCQ|1|0|C|2431
3CCQ|1|0|C|2432
*
3CCQ|1|0|G|2459
3CCQ|1|0|A|2460
3CCQ|1|0|U|2461
3CCQ|1|0|G|2462
3CCQ|1|0|A|2463
3CCQ|1|0|C|2464
3CCQ|1|0|A|2465
3CCQ|1|0|G|2466
3CCQ|1|0|A|2467
3CCQ|1|0|A|2468
3CCQ|1|0|A|2469
3CCQ|1|0|A|2470

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain 3

50S ribosomal protein L44E

Chain A

50S ribosomal protein L2P

Chain L

50S ribosomal protein L15P

Chain M

50S ribosomal protein L15e

Chain Q

50S ribosomal protein L21e