J6_3CCV_002

3D structure

PDB id

3CCV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Anisomycin resistant 50S Ribosomal Subunit: 23S rRNA mutation G2616A

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UUUA*UUUG*CG*CGCC*GUCUAGCGAACC*GAUGACAGAAAA

Length

38 nucleotides

Bulged bases

3CCV|1|0|U|2117, 3CCV|1|0|A|2425, 3CCV|1|0|C|2427, 3CCV|1|0|A|2465, 3CCV|1|0|A|2467, 3CCV|1|0|A|2468

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3CCV|1|0|U|2115
3CCV|1|0|U|2116
3CCV|1|0|U|2117
3CCV|1|0|A|2118
*
3CCV|1|0|U|2276
3CCV|1|0|U|2277
3CCV|1|0|U|2278
3CCV|1|0|G|2279
*
3CCV|1|0|C|2292
3CCV|1|0|G|2293
*
3CCV|1|0|C|2315
3CCV|1|0|G|2316
3CCV|1|0|C|2317
3CCV|1|0|C|2318
*
3CCV|1|0|G|2421
3CCV|1|0|U|2422
3CCV|1|0|C|2423
3CCV|1|0|U|2424
3CCV|1|0|A|2425
3CCV|1|0|G|2426
3CCV|1|0|C|2427
3CCV|1|0|G|2428
3CCV|1|0|A|2429
3CCV|1|0|A|2430
3CCV|1|0|C|2431
3CCV|1|0|C|2432
*
3CCV|1|0|G|2459
3CCV|1|0|A|2460
3CCV|1|0|U|2461
3CCV|1|0|G|2462
3CCV|1|0|A|2463
3CCV|1|0|C|2464
3CCV|1|0|A|2465
3CCV|1|0|G|2466
3CCV|1|0|A|2467
3CCV|1|0|A|2468
3CCV|1|0|A|2469
3CCV|1|0|A|2470

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain 3

50S ribosomal protein L44E

Chain A

50S ribosomal protein L2P

Chain L

50S ribosomal protein L15P

Chain M

50S ribosomal protein L15e

Chain Q

50S ribosomal protein L21e