J6_3CD6_002
3D structure
- PDB id
- 3CD6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Co-cystal of large Ribosomal Subunit mutant G2616A with CC-Puromycin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.75 Å
Loop
- Sequence
- UUUA*UUUG*CG*CGCC*GUCUAGCGAACC*GAUGACAGAAAA
- Length
- 38 nucleotides
- Bulged bases
- 3CD6|1|0|U|2117, 3CD6|1|0|A|2425, 3CD6|1|0|A|2465, 3CD6|1|0|A|2467, 3CD6|1|0|A|2468
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
3CD6|1|0|U|2115
3CD6|1|0|U|2116
3CD6|1|0|U|2117
3CD6|1|0|A|2118
*
3CD6|1|0|U|2276
3CD6|1|0|U|2277
3CD6|1|0|U|2278
3CD6|1|0|G|2279
*
3CD6|1|0|C|2292
3CD6|1|0|G|2293
*
3CD6|1|0|C|2315
3CD6|1|0|G|2316
3CD6|1|0|C|2317
3CD6|1|0|C|2318
*
3CD6|1|0|G|2421
3CD6|1|0|U|2422
3CD6|1|0|C|2423
3CD6|1|0|U|2424
3CD6|1|0|A|2425
3CD6|1|0|G|2426
3CD6|1|0|C|2427
3CD6|1|0|G|2428
3CD6|1|0|A|2429
3CD6|1|0|A|2430
3CD6|1|0|C|2431
3CD6|1|0|C|2432
*
3CD6|1|0|G|2459
3CD6|1|0|A|2460
3CD6|1|0|U|2461
3CD6|1|0|G|2462
3CD6|1|0|A|2463
3CD6|1|0|C|2464
3CD6|1|0|A|2465
3CD6|1|0|G|2466
3CD6|1|0|A|2467
3CD6|1|0|A|2468
3CD6|1|0|A|2469
3CD6|1|0|A|2470
Current chains
- Chain 0
- 23S RIBOSOMAL RNA
Nearby chains
- Chain 3
- 50S ribosomal protein L44E
- Chain A
- 50S ribosomal protein L2P
- Chain L
- 50S ribosomal protein L15P
- Chain M
- 50S ribosomal protein L15e
- Chain Q
- 50S ribosomal protein L21e
Coloring options: