J6_3CF5_001

3D structure

PDB id

3CF5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thiopeptide antibiotic Thiostrepton bound to the large ribosomal subunit of Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GC*GGAAC*GGAGAAGAAAG*CGAUU*AUCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

3CF5|1|X|A|200

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3CF5|1|X|G|44
3CF5|1|X|C|45
*
3CF5|1|X|G|156
3CF5|1|X|G|157
3CF5|1|X|A|158
3CF5|1|X|A|159
3CF5|1|X|C|160
*
3CF5|1|X|G|191
3CF5|1|X|G|192
3CF5|1|X|A|193
3CF5|1|X|G|194
3CF5|1|X|A|195
3CF5|1|X|A|196
3CF5|1|X|G|197
3CF5|1|X|A|198
3CF5|1|X|A|199
3CF5|1|X|A|200
3CF5|1|X|G|201
*
3CF5|1|X|C|208
3CF5|1|X|G|209
3CF5|1|X|A|210
3CF5|1|X|U|211
3CF5|1|X|U|212
*
3CF5|1|X|A|239
3CF5|1|X|U|240
3CF5|1|X|C|241
3CF5|1|X|A|242
3CF5|1|X|G|243
*
3CF5|1|X|C|439
3CF5|1|X|U|440
3CF5|1|X|A|441
3CF5|1|X|A|442
3CF5|1|X|A|443
3CF5|1|X|U|444
3CF5|1|X|A|445
3CF5|1|X|C|446

Current chains

Chain X

RRNA-23S RIBOSOMAL RNA

Nearby chains

Chain 2

50S RIBOSOMAL PROTEIN L34