J6_3CMA_001

3D structure

PDB id

3CMA (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of CCA and CCA-Phe-Cap-Bio bound to the large ribosomal subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GC*GGAAC*GGAACAGAAAA*UGAUG*UACAG*CUAAACAC

Length

36 nucleotides

Bulged bases

3CMA|1|0|A|193, 3CMA|1|0|C|438

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3CMA|1|0|G|41
3CMA|1|0|C|42
*
3CMA|1|0|G|149
3CMA|1|0|G|150
3CMA|1|0|A|151
3CMA|1|0|A|152
3CMA|1|0|C|153
*
3CMA|1|0|G|184
3CMA|1|0|G|185
3CMA|1|0|A|186
3CMA|1|0|A|187
3CMA|1|0|C|188
3CMA|1|0|A|189
3CMA|1|0|G|190
3CMA|1|0|A|191
3CMA|1|0|A|192
3CMA|1|0|A|193
3CMA|1|0|A|194
*
3CMA|1|0|U|202
3CMA|1|0|G|203
3CMA|1|0|A|204
3CMA|1|0|U|205
3CMA|1|0|G|206
*
3CMA|1|0|U|233
3CMA|1|0|A|234
3CMA|1|0|C|235
3CMA|1|0|A|236
3CMA|1|0|G|237
*
3CMA|1|0|C|433
3CMA|1|0|U|434
3CMA|1|0|A|435
3CMA|1|0|A|436
3CMA|1|0|A|437
3CMA|1|0|C|438
3CMA|1|0|A|439
3CMA|1|0|C|440

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain 1

50S ribosomal protein L37e

Chain M

50S ribosomal protein L15e