J6_3CME_002

3D structure

PDB id

3CME (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Structure of CA and CCA-PHE-CAP-BIO Bound to the Large Ribosomal Subunit of Haloarcula Marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

UUUA*UUUG*CG*CGCC*GUCUAGCGAACC*GAUGACAGAAAA

Length

38 nucleotides

Bulged bases

3CME|1|0|U|2117, 3CME|1|0|A|2425, 3CME|1|0|A|2465, 3CME|1|0|A|2467, 3CME|1|0|A|2468

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3CME|1|0|U|2115
3CME|1|0|U|2116
3CME|1|0|U|2117
3CME|1|0|A|2118
*
3CME|1|0|U|2276
3CME|1|0|U|2277
3CME|1|0|U|2278
3CME|1|0|G|2279
*
3CME|1|0|C|2292
3CME|1|0|G|2293
*
3CME|1|0|C|2315
3CME|1|0|G|2316
3CME|1|0|C|2317
3CME|1|0|C|2318
*
3CME|1|0|G|2421
3CME|1|0|U|2422
3CME|1|0|C|2423
3CME|1|0|U|2424
3CME|1|0|A|2425
3CME|1|0|G|2426
3CME|1|0|C|2427
3CME|1|0|G|2428
3CME|1|0|A|2429
3CME|1|0|A|2430
3CME|1|0|C|2431
3CME|1|0|C|2432
*
3CME|1|0|G|2459
3CME|1|0|A|2460
3CME|1|0|U|2461
3CME|1|0|G|2462
3CME|1|0|A|2463
3CME|1|0|C|2464
3CME|1|0|A|2465
3CME|1|0|G|2466
3CME|1|0|A|2467
3CME|1|0|A|2468
3CME|1|0|A|2469
3CME|1|0|A|2470

Current chains

Chain 0

50S RIBOSOMAL RNA

Nearby chains

Chain 3

50S ribosomal protein L44E

Chain A

50S ribosomal protein L2P

Chain L

50S ribosomal protein L15P

Chain M

50S ribosomal protein L15e

Chain Q

50S ribosomal protein L21e