J6_3CPW_001

3D structure

PDB id

3CPW (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the antibiotic LINEZOLID bound to the large ribosomal subunit of HALOARCULA MARISMORTUI

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

GC*GGAAC*GGAACAGAAAA*UGAUG*UACAG*CUAAACAC

Length

36 nucleotides

Bulged bases

3CPW|1|0|A|193, 3CPW|1|0|C|438

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3CPW|1|0|G|41
3CPW|1|0|C|42
*
3CPW|1|0|G|149
3CPW|1|0|G|150
3CPW|1|0|A|151
3CPW|1|0|A|152
3CPW|1|0|C|153
*
3CPW|1|0|G|184
3CPW|1|0|G|185
3CPW|1|0|A|186
3CPW|1|0|A|187
3CPW|1|0|C|188
3CPW|1|0|A|189
3CPW|1|0|G|190
3CPW|1|0|A|191
3CPW|1|0|A|192
3CPW|1|0|A|193
3CPW|1|0|A|194
*
3CPW|1|0|U|202
3CPW|1|0|G|203
3CPW|1|0|A|204
3CPW|1|0|U|205
3CPW|1|0|G|206
*
3CPW|1|0|U|233
3CPW|1|0|A|234
3CPW|1|0|C|235
3CPW|1|0|A|236
3CPW|1|0|G|237
*
3CPW|1|0|C|433
3CPW|1|0|U|434
3CPW|1|0|A|435
3CPW|1|0|A|436
3CPW|1|0|A|437
3CPW|1|0|C|438
3CPW|1|0|A|439
3CPW|1|0|C|440

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain L

50S ribosomal protein L15e

Chain Z

50S ribosomal protein L37e