J6_3CXC_002

3D structure

PDB id

3CXC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of an enhanced oxazolidinone inhibitor bound to the 50S ribosomal subunit of H. marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UUUA*UUUG*CG*CGCC*GUCUAGCGAACC*GAUGACAGAAAA

Length

38 nucleotides

Bulged bases

3CXC|1|0|U|2117, 3CXC|1|0|A|2425, 3CXC|1|0|A|2465, 3CXC|1|0|A|2467, 3CXC|1|0|A|2468

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3CXC|1|0|U|2115
3CXC|1|0|U|2116
3CXC|1|0|U|2117
3CXC|1|0|A|2118
*
3CXC|1|0|U|2276
3CXC|1|0|U|2277
3CXC|1|0|U|2278
3CXC|1|0|G|2279
*
3CXC|1|0|C|2292
3CXC|1|0|G|2293
*
3CXC|1|0|C|2315
3CXC|1|0|G|2316
3CXC|1|0|C|2317
3CXC|1|0|C|2318
*
3CXC|1|0|G|2421
3CXC|1|0|U|2422
3CXC|1|0|C|2423
3CXC|1|0|U|2424
3CXC|1|0|A|2425
3CXC|1|0|G|2426
3CXC|1|0|C|2427
3CXC|1|0|G|2428
3CXC|1|0|A|2429
3CXC|1|0|A|2430
3CXC|1|0|C|2431
3CXC|1|0|C|2432
*
3CXC|1|0|G|2459
3CXC|1|0|A|2460
3CXC|1|0|U|2461
3CXC|1|0|G|2462
3CXC|1|0|A|2463
3CXC|1|0|C|2464
3CXC|1|0|A|2465
3CXC|1|0|G|2466
3CXC|1|0|A|2467
3CXC|1|0|A|2468
3CXC|1|0|A|2469
3CXC|1|0|A|2470

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain 2

RIBOSOMAL PROTEIN L44E

Chain A

RIBOSOMAL PROTEIN L2

Chain K

RIBOSOMAL PROTEIN L15

Chain L

RIBOSOMAL PROTEIN L15E

Chain P

RIBOSOMAL PROTEIN L21E