J6_3I56_002

3D structure

PDB id

3I56 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-crystal structure of Triacetyloleandomcyin Bound to the Large Ribosomal Subunit

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UUUA*UUUG*CG*CGCC*GUCUAGCGAACC*GAUGACAGAAAA

Length

38 nucleotides

Bulged bases

3I56|1|0|U|2117, 3I56|1|0|A|2425, 3I56|1|0|A|2465, 3I56|1|0|A|2467, 3I56|1|0|A|2468

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3I56|1|0|U|2115
3I56|1|0|U|2116
3I56|1|0|U|2117
3I56|1|0|A|2118
*
3I56|1|0|U|2276
3I56|1|0|U|2277
3I56|1|0|U|2278
3I56|1|0|G|2279
*
3I56|1|0|C|2292
3I56|1|0|G|2293
*
3I56|1|0|C|2315
3I56|1|0|G|2316
3I56|1|0|C|2317
3I56|1|0|C|2318
*
3I56|1|0|G|2421
3I56|1|0|U|2422
3I56|1|0|C|2423
3I56|1|0|U|2424
3I56|1|0|A|2425
3I56|1|0|G|2426
3I56|1|0|C|2427
3I56|1|0|G|2428
3I56|1|0|A|2429
3I56|1|0|A|2430
3I56|1|0|C|2431
3I56|1|0|C|2432
*
3I56|1|0|G|2459
3I56|1|0|A|2460
3I56|1|0|U|2461
3I56|1|0|G|2462
3I56|1|0|A|2463
3I56|1|0|C|2464
3I56|1|0|A|2465
3I56|1|0|G|2466
3I56|1|0|A|2467
3I56|1|0|A|2468
3I56|1|0|A|2469
3I56|1|0|A|2470

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain 3

50S ribosomal protein L44E

Chain A

50S ribosomal protein L2P

Chain L

50S ribosomal protein L15P

Chain M

50S ribosomal protein L15e

Chain Q

50S ribosomal protein L21e