J6_3IZ4_002

3D structure

PDB id

3IZ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Modified E. coli tmRNA in the resume state with the tRNA-like domain in the ribosomal P site interacting with the SmpB

Experimental method

ELECTRON MICROSCOPY

Resolution

13.6 Å

Loop

Sequence

CCG*CGUAAAAAGCCGCAAAAAAUAGUCGCAAACGACGAAAACUACCAU*AUGCC*GGUCAAACCCAAAAGAGAUCGCGUGGAAG*UUGAAGCGUUAAAACUUAAUCAGGCUAG*CGAAUGUAAAGACUGACUAAG

Length

131 nucleotides

Bulged bases

3IZ4|1|A|U|68, 3IZ4|1|A|A|69, 3IZ4|1|A|C|78, 3IZ4|1|A|A|82, 3IZ4|1|A|A|83, 3IZ4|1|A|A|84, 3IZ4|1|A|U|85, 3IZ4|1|A|A|86, 3IZ4|1|A|A|93, 3IZ4|1|A|A|94, 3IZ4|1|A|C|95, 3IZ4|1|A|A|100, 3IZ4|1|A|A|101, 3IZ4|1|A|A|102, 3IZ4|1|A|A|103, 3IZ4|1|A|A|106, 3IZ4|1|A|C|108, 3IZ4|1|A|U|151, 3IZ4|1|A|U|197, 3IZ4|1|A|C|202, 3IZ4|1|A|C|203, 3IZ4|1|A|C|204, 3IZ4|1|A|A|205, 3IZ4|1|A|A|206, 3IZ4|1|A|A|207, 3IZ4|1|A|C|214, 3IZ4|1|A|G|215, 3IZ4|1|A|U|245, 3IZ4|1|A|A|246, 3IZ4|1|A|A|247, 3IZ4|1|A|A|249, 3IZ4|1|A|C|250, 3IZ4|1|A|A|254, 3IZ4|1|A|G|299, 3IZ4|1|A|A|300, 3IZ4|1|A|A|305, 3IZ4|1|A|A|306

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3IZ4|1|A|C|48
3IZ4|1|A|C|49
3IZ4|1|A|G|50
*
3IZ4|1|A|C|66
3IZ4|1|A|G|67
3IZ4|1|A|U|68
3IZ4|1|A|A|69
3IZ4|1|A|A|70
3IZ4|1|A|A|71
3IZ4|1|A|A|72
3IZ4|1|A|A|73
3IZ4|1|A|G|74
3IZ4|1|A|C|75
3IZ4|1|A|C|76
3IZ4|1|A|G|77
3IZ4|1|A|C|78
3IZ4|1|A|A|79
3IZ4|1|A|A|80
3IZ4|1|A|A|81
3IZ4|1|A|A|82
3IZ4|1|A|A|83
3IZ4|1|A|A|84
3IZ4|1|A|U|85
3IZ4|1|A|A|86
3IZ4|1|A|G|87
3IZ4|1|A|U|88
3IZ4|1|A|C|89
3IZ4|1|A|G|90
3IZ4|1|A|C|91
3IZ4|1|A|A|92
3IZ4|1|A|A|93
3IZ4|1|A|A|94
3IZ4|1|A|C|95
3IZ4|1|A|G|96
3IZ4|1|A|A|97
3IZ4|1|A|C|98
3IZ4|1|A|G|99
3IZ4|1|A|A|100
3IZ4|1|A|A|101
3IZ4|1|A|A|102
3IZ4|1|A|A|103
3IZ4|1|A|C|104
3IZ4|1|A|U|105
3IZ4|1|A|A|106
3IZ4|1|A|C|107
3IZ4|1|A|C|108
3IZ4|1|A|A|109
3IZ4|1|A|U|110
*
3IZ4|1|A|A|150
3IZ4|1|A|U|151
3IZ4|1|A|G|152
3IZ4|1|A|C|153
3IZ4|1|A|C|154
*
3IZ4|1|A|G|195
3IZ4|1|A|G|196
3IZ4|1|A|U|197
3IZ4|1|A|C|198
3IZ4|1|A|A|199
3IZ4|1|A|A|200
3IZ4|1|A|A|201
3IZ4|1|A|C|202
3IZ4|1|A|C|203
3IZ4|1|A|C|204
3IZ4|1|A|A|205
3IZ4|1|A|A|206
3IZ4|1|A|A|207
3IZ4|1|A|A|208
3IZ4|1|A|G|209
3IZ4|1|A|A|210
3IZ4|1|A|G|211
3IZ4|1|A|A|212
3IZ4|1|A|U|213
3IZ4|1|A|C|214
3IZ4|1|A|G|215
3IZ4|1|A|C|216
3IZ4|1|A|G|217
3IZ4|1|A|U|218
3IZ4|1|A|G|219
3IZ4|1|A|G|220
3IZ4|1|A|A|221
3IZ4|1|A|A|222
3IZ4|1|A|G|223
*
3IZ4|1|A|U|236
3IZ4|1|A|U|237
3IZ4|1|A|G|238
3IZ4|1|A|A|239
3IZ4|1|A|A|240
3IZ4|1|A|G|241
3IZ4|1|A|C|242
3IZ4|1|A|G|243
3IZ4|1|A|U|244
3IZ4|1|A|U|245
3IZ4|1|A|A|246
3IZ4|1|A|A|247
3IZ4|1|A|A|248
3IZ4|1|A|A|249
3IZ4|1|A|C|250
3IZ4|1|A|U|251
3IZ4|1|A|U|252
3IZ4|1|A|A|253
3IZ4|1|A|A|254
3IZ4|1|A|U|255
3IZ4|1|A|C|256
3IZ4|1|A|A|257
3IZ4|1|A|G|258
3IZ4|1|A|G|259
3IZ4|1|A|C|260
3IZ4|1|A|U|261
3IZ4|1|A|A|262
3IZ4|1|A|G|263
*
3IZ4|1|A|C|298
3IZ4|1|A|G|299
3IZ4|1|A|A|300
3IZ4|1|A|A|301
3IZ4|1|A|U|302
3IZ4|1|A|G|303
3IZ4|1|A|U|304
3IZ4|1|A|A|305
3IZ4|1|A|A|306
3IZ4|1|A|A|307
3IZ4|1|A|G|308
3IZ4|1|A|A|309
3IZ4|1|A|C|310
3IZ4|1|A|U|311
3IZ4|1|A|G|312
3IZ4|1|A|A|313
3IZ4|1|A|C|314
3IZ4|1|A|U|315
3IZ4|1|A|A|316
3IZ4|1|A|A|317
3IZ4|1|A|G|318

Current chains

Chain A

Modified E. coli transfer-messenger RNA

Nearby chains

Chain B

SsrA-binding protein