J6_3J6B_001
3D structure
- PDB id
- 3J6B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast mitochondrial large ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CAUAAA*UAAAUUG*UAGUAAUAGAUAAAAAUAUG*CGAUAAU*AGU*AUG
- Length
- 46 nucleotides
- Bulged bases
- 3J6B|1|A|A|2316, 3J6B|1|A|U|2379, 3J6B|1|A|U|2380, 3J6B|1|A|U|2424, 3J6B|1|A|A|2425, 3J6B|1|A|A|2426, 3J6B|1|A|U|2427, 3J6B|1|A|A|2428, 3J6B|1|A|A|2430, 3J6B|1|A|A|2432, 3J6B|1|A|A|2433, 3J6B|1|A|A|2438, 3J6B|1|A|U|2611
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
3J6B|1|A|C|2312
3J6B|1|A|A|2313
3J6B|1|A|U|2314
3J6B|1|A|A|2315
3J6B|1|A|A|2316
3J6B|1|A|A|2317
*
3J6B|1|A|U|2375
3J6B|1|A|A|2376
3J6B|1|A|A|2377
3J6B|1|A|A|2378
3J6B|1|A|U|2379
3J6B|1|A|U|2380
3J6B|1|A|G|2381
*
3J6B|1|A|U|2421
3J6B|1|A|A|2422
3J6B|1|A|G|2423
3J6B|1|A|U|2424
3J6B|1|A|A|2425
3J6B|1|A|A|2426
3J6B|1|A|U|2427
3J6B|1|A|A|2428
3J6B|1|A|G|2429
3J6B|1|A|A|2430
3J6B|1|A|U|2431
3J6B|1|A|A|2432
3J6B|1|A|A|2433
3J6B|1|A|A|2434
3J6B|1|A|A|2435
3J6B|1|A|A|2436
3J6B|1|A|U|2437
3J6B|1|A|A|2438
3J6B|1|A|U|2439
3J6B|1|A|G|2440
*
3J6B|1|A|C|2608
3J6B|1|A|G|2609
3J6B|1|A|A|2610
3J6B|1|A|U|2611
3J6B|1|A|A|2612
3J6B|1|A|A|2613
3J6B|1|A|U|2614
*
3J6B|1|A|A|2637
3J6B|1|A|G|2638
3J6B|1|A|U|2639
*
3J6B|1|A|A|2648
3J6B|1|A|U|2649
3J6B|1|A|G|2650
Current chains
- Chain A
- 21S ribosomal RNA
Nearby chains
- Chain 1
- 54S ribosomal protein L35, mitochondrial
- Chain 2
- 54S ribosomal protein L28, mitochondrial
- Chain 6
- 54S ribosomal protein L17, mitochondrial
- Chain E
- 54S ribosomal protein L7, mitochondrial
- Chain R
- 54S ribosomal protein L2, mitochondrial
- Chain V
- 54S ribosomal protein L36, mitochondrial
- Chain X
- 54S ribosomal protein L39, mitochondrial
- Chain Z
- mitochondrial ribosomal protein YNL122C
- Chain b
- 54S ribosomal protein L25, mitochondrial
Coloring options: