Loop J6_3J71

3D structure

PDB id: 3J71 (explore in PDB, NAKB, or RNA 3D Hub)
Description: Structure of the mammalian 60S ribosomal subunit
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å

Loop

Sequence: GACUG*CAAAGCAUC*GAUGUGAUUUCUG*CGGGA*UCUCUUAAGGUAGC*GCAUGAAUGGAUGAAC
Length: 62 nucleotides
Bulged bases: 3J71|1|5|C|3771, 3J71|1|5|U|3818
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

3J71|1|5|G|3634
3J71|1|5|A|3635
3J71|1|5|C|3636
3J71|1|5|U|3637
3J71|1|5|G|3638
*
3J71|1|5|C|3650
3J71|1|5|A|3651
3J71|1|5|A|3652
3J71|1|5|A|3653
3J71|1|5|G|3654
3J71|1|5|C|3655
3J71|1|5|A|3656
3J71|1|5|U|3657
3J71|1|5|C|3658
*
3J71|1|5|G|3686
3J71|1|5|A|3687
3J71|1|5|U|3688
3J71|1|5|G|3689
3J71|1|5|U|3690
3J71|1|5|G|3691
3J71|1|5|A|3692
3J71|1|5|U|3693
3J71|1|5|U|3694
3J71|1|5|U|3695
3J71|1|5|C|3696
3J71|1|5|U|3697
3J71|1|5|G|3698
*
3J71|1|5|C|3752
3J71|1|5|G|3753
3J71|1|5|G|3754
3J71|1|5|G|3755
3J71|1|5|A|3756
*
3J71|1|5|U|3768
3J71|1|5|C|3769
3J71|1|5|U|3770
3J71|1|5|C|3771
3J71|1|5|U|3772
3J71|1|5|U|3773
3J71|1|5|A|3774
3J71|1|5|A|3775
3J71|1|5|G|3776
3J71|1|5|G|3777
3J71|1|5|U|3778
3J71|1|5|A|3779
3J71|1|5|G|3780
3J71|1|5|C|3781
*
3J71|1|5|G|3811
3J71|1|5|C|3812
3J71|1|5|A|3813
3J71|1|5|U|3814
3J71|1|5|G|3815
3J71|1|5|A|3816
3J71|1|5|A|3817
3J71|1|5|U|3818
3J71|1|5|G|3819
3J71|1|5|G|3820
3J71|1|5|A|3821
3J71|1|5|U|3822
3J71|1|5|G|3823
3J71|1|5|A|3824
3J71|1|5|A|3825
3J71|1|5|C|3826

Current chains

Chain 5: 28S ribosomal RNA

Nearby chains

Chain A: Ribosomal protein uL12
Chain n: Ribosomal protein eL41
Chain p: Ribosomal protein eL43

J6_3J71_001