3D structure

PDB id
3J7Q (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the idle mammalian ribosome-Sec61 complex
Experimental method
ELECTRON MICROSCOPY
Resolution
3.4 Å

Loop

Sequence
GACUG*CAAAGCAU*AUGUGAUUUCUG*CGGG*CUCUUAAGGUAG*UGAAUGGAUGAAC
Length
54 nucleotides
Bulged bases
3J7Q|1|5|U|3818
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

3J7Q|1|5|G|3634
3J7Q|1|5|A|3635
3J7Q|1|5|C|3636
3J7Q|1|5|U|3637
3J7Q|1|5|G|3638
*
3J7Q|1|5|C|3650
3J7Q|1|5|A|3651
3J7Q|1|5|A|3652
3J7Q|1|5|A|3653
3J7Q|1|5|G|3654
3J7Q|1|5|C|3655
3J7Q|1|5|A|3656
3J7Q|1|5|U|3657
*
3J7Q|1|5|A|3687
3J7Q|1|5|U|3688
3J7Q|1|5|G|3689
3J7Q|1|5|U|3690
3J7Q|1|5|G|3691
3J7Q|1|5|A|3692
3J7Q|1|5|U|3693
3J7Q|1|5|U|3694
3J7Q|1|5|U|3695
3J7Q|1|5|C|3696
3J7Q|1|5|U|3697
3J7Q|1|5|G|3698
*
3J7Q|1|5|C|3752
3J7Q|1|5|G|3753
3J7Q|1|5|G|3754
3J7Q|1|5|G|3755
*
3J7Q|1|5|C|3769
3J7Q|1|5|U|3770
3J7Q|1|5|C|3771
3J7Q|1|5|U|3772
3J7Q|1|5|U|3773
3J7Q|1|5|A|3774
3J7Q|1|5|A|3775
3J7Q|1|5|G|3776
3J7Q|1|5|G|3777
3J7Q|1|5|U|3778
3J7Q|1|5|A|3779
3J7Q|1|5|G|3780
*
3J7Q|1|5|U|3814
3J7Q|1|5|G|3815
3J7Q|1|5|A|3816
3J7Q|1|5|A|3817
3J7Q|1|5|U|3818
3J7Q|1|5|G|3819
3J7Q|1|5|G|3820
3J7Q|1|5|A|3821
3J7Q|1|5|U|3822
3J7Q|1|5|G|3823
3J7Q|1|5|A|3824
3J7Q|1|5|A|3825
3J7Q|1|5|C|3826

Current chains

Chain 5
28S ribosomal RNA

Nearby chains

Chain A
Ribosomal protein uL2
Chain n
Ribosomal protein eL41
Chain p
Ribosomal protein eL43

Coloring options:

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