J6_3J9Y_001

3D structure

PDB id

3J9Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of tetracycline resistance protein TetM bound to a translating E.coli ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

3J9Y|1|A|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3J9Y|1|A|G|45
3J9Y|1|A|G|46
*
3J9Y|1|A|C|179
3J9Y|1|A|G|180
3J9Y|1|A|A|181
3J9Y|1|A|A|182
3J9Y|1|A|C|183
*
3J9Y|1|A|G|214
3J9Y|1|A|G|215
3J9Y|1|A|A|216
3J9Y|1|A|A|217
3J9Y|1|A|A|218
3J9Y|1|A|A|219
3J9Y|1|A|G|220
3J9Y|1|A|A|221
3J9Y|1|A|A|222
3J9Y|1|A|A|223
3J9Y|1|A|U|224
*
3J9Y|1|A|A|231
3J9Y|1|A|G|232
3J9Y|1|A|A|233
3J9Y|1|A|U|234
3J9Y|1|A|U|235
*
3J9Y|1|A|A|262
3J9Y|1|A|G|263
3J9Y|1|A|C|264
3J9Y|1|A|A|265
3J9Y|1|A|G|266
*
3J9Y|1|A|C|426
3J9Y|1|A|U|427
3J9Y|1|A|A|428
3J9Y|1|A|A|429
3J9Y|1|A|A|430
3J9Y|1|A|U|431
3J9Y|1|A|A|432
3J9Y|1|A|C|433

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34