J6_3J9Y_002

3D structure

PDB id

3J9Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of tetracycline resistance protein TetM bound to a translating E.coli ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UUUA*UUUG*CU*AGCA*UCAUAGUGAUCC*GCUCAACGGAUAAAA

Length

41 nucleotides

Bulged bases

3J9Y|1|A|U|2076, 3J9Y|1|A|A|2388, 3J9Y|1|A|U|2390, 3J9Y|1|A|G|2428, 3J9Y|1|A|A|2430, 3J9Y|1|A|U|2431

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3J9Y|1|A|U|2074
3J9Y|1|A|U|2075
3J9Y|1|A|U|2076
3J9Y|1|A|A|2077
*
3J9Y|1|A|U|2243
3J9Y|1|A|U|2244
3J9Y|1|A|U|2245
3J9Y|1|A|G|2246
*
3J9Y|1|A|C|2258
3J9Y|1|A|U|2259
*
3J9Y|1|A|A|2281
3J9Y|1|A|G|2282
3J9Y|1|A|C|2283
3J9Y|1|A|A|2284
*
3J9Y|1|A|U|2384
3J9Y|1|A|C|2385
3J9Y|1|A|A|2386
3J9Y|1|A|U|2387
3J9Y|1|A|A|2388
3J9Y|1|A|G|2389
3J9Y|1|A|U|2390
3J9Y|1|A|G|2391
3J9Y|1|A|A|2392
3J9Y|1|A|U|2393
3J9Y|1|A|C|2394
3J9Y|1|A|C|2395
*
3J9Y|1|A|G|2421
3J9Y|1|A|C|2422
3J9Y|1|A|U|2423
3J9Y|1|A|C|2424
3J9Y|1|A|A|2425
3J9Y|1|A|A|2426
3J9Y|1|A|C|2427
3J9Y|1|A|G|2428
3J9Y|1|A|G|2429
3J9Y|1|A|A|2430
3J9Y|1|A|U|2431
3J9Y|1|A|A|2432
3J9Y|1|A|A|2433
3J9Y|1|A|A|2434
3J9Y|1|A|A|2435

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 1

50S ribosomal protein L33

Chain 3

50S ribosomal protein L35

Chain C

50S ribosomal protein L2

Chain L

50S ribosomal protein L15

Chain W

50S ribosomal protein L27

Chain X

50S ribosomal protein L28