Loop J6_3JAJ

3D structure

PDB id: 3JAJ (explore in PDB, NAKB, or RNA 3D Hub)
Description: Structure of the engaged state of the mammalian SRP-ribosome complex
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.75 Å

Loop

Sequence: GACUG*CAAAGCAUC*GAUGUGAUUUCUG*CGG*UCUUAAGGUAGC*GCAUGAAUGGAUGAAC
Length: 58 nucleotides
Bulged bases: 3JAJ|1|5|U|3818
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

3JAJ|1|5|G|3634
3JAJ|1|5|A|3635
3JAJ|1|5|C|3636
3JAJ|1|5|U|3637
3JAJ|1|5|G|3638
*
3JAJ|1|5|C|3650
3JAJ|1|5|A|3651
3JAJ|1|5|A|3652
3JAJ|1|5|A|3653
3JAJ|1|5|G|3654
3JAJ|1|5|C|3655
3JAJ|1|5|A|3656
3JAJ|1|5|U|3657
3JAJ|1|5|C|3658
*
3JAJ|1|5|G|3686
3JAJ|1|5|A|3687
3JAJ|1|5|U|3688
3JAJ|1|5|G|3689
3JAJ|1|5|U|3690
3JAJ|1|5|G|3691
3JAJ|1|5|A|3692
3JAJ|1|5|U|3693
3JAJ|1|5|U|3694
3JAJ|1|5|U|3695
3JAJ|1|5|C|3696
3JAJ|1|5|U|3697
3JAJ|1|5|G|3698
*
3JAJ|1|5|C|3752
3JAJ|1|5|G|3753
3JAJ|1|5|G|3754
*
3JAJ|1|5|U|3770
3JAJ|1|5|C|3771
3JAJ|1|5|U|3772
3JAJ|1|5|U|3773
3JAJ|1|5|A|3774
3JAJ|1|5|A|3775
3JAJ|1|5|G|3776
3JAJ|1|5|G|3777
3JAJ|1|5|U|3778
3JAJ|1|5|A|3779
3JAJ|1|5|G|3780
3JAJ|1|5|C|3781
*
3JAJ|1|5|G|3811
3JAJ|1|5|C|3812
3JAJ|1|5|A|3813
3JAJ|1|5|U|3814
3JAJ|1|5|G|3815
3JAJ|1|5|A|3816
3JAJ|1|5|A|3817
3JAJ|1|5|U|3818
3JAJ|1|5|G|3819
3JAJ|1|5|G|3820
3JAJ|1|5|A|3821
3JAJ|1|5|U|3822
3JAJ|1|5|G|3823
3JAJ|1|5|A|3824
3JAJ|1|5|A|3825
3JAJ|1|5|C|3826

Current chains

Chain 5: 28S ribosomal RNA

Nearby chains

Chain 3: Transfer RNA; tRNA
Chain A: Ribosomal protein uL2
Chain S2: Small subunit ribosomal RNA; SSU rRNA
Chain n: Ribosomal protein eL41
Chain p: Ribosomal protein eL43

J6_3JAJ_001