3D structure

PDB id
3JCD (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of Escherichia coli EF4 in posttranslocational ribosomes (Post EF4)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.7 Å

Loop

Sequence
AGAGG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUACUCCU
Length
43 nucleotides
Bulged bases
3JCD|1|A|A|223
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

3JCD|1|A|A|42
3JCD|1|A|G|43
3JCD|1|A|A|44
3JCD|1|A|G|45
3JCD|1|A|G|46
*
3JCD|1|A|C|179
3JCD|1|A|G|180
3JCD|1|A|A|181
3JCD|1|A|A|182
3JCD|1|A|C|183
*
3JCD|1|A|G|214
3JCD|1|A|G|215
3JCD|1|A|A|216
3JCD|1|A|A|217
3JCD|1|A|A|218
3JCD|1|A|A|219
3JCD|1|A|G|220
3JCD|1|A|A|221
3JCD|1|A|A|222
3JCD|1|A|A|223
3JCD|1|A|U|224
*
3JCD|1|A|A|231
3JCD|1|A|G|232
3JCD|1|A|A|233
3JCD|1|A|U|234
3JCD|1|A|U|235
*
3JCD|1|A|A|262
3JCD|1|A|G|263
3JCD|1|A|C|264
3JCD|1|A|A|265
3JCD|1|A|G|266
*
3JCD|1|A|C|426
3JCD|1|A|U|427
3JCD|1|A|A|428
3JCD|1|A|A|429
3JCD|1|A|A|430
3JCD|1|A|U|431
3JCD|1|A|A|432
3JCD|1|A|C|433
3JCD|1|A|U|434
3JCD|1|A|C|435
3JCD|1|A|C|436
3JCD|1|A|U|437

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain 2
50S ribosomal protein L34

Coloring options:

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