J6_3JCT_003
3D structure
- PDB id
- 3JCT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-em structure of eukaryotic pre-60S ribosomal subunits
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.08 Å
Loop
- Sequence
- CGAAGUUUCCCUCAGGAUAG*UGGG*CGAUGC*GAACG*CC*GAGUAG
- Length
- 43 nucleotides
- Bulged bases
- 3JCT|1|1|G|1116, 3JCT|1|1|A|1159
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
3JCT|1|1|C|949
3JCT|1|1|G|950
3JCT|1|1|A|951
3JCT|1|1|A|952
3JCT|1|1|G|953
3JCT|1|1|U|954
3JCT|1|1|U|955
3JCT|1|1|U|956
3JCT|1|1|C|957
3JCT|1|1|C|958
3JCT|1|1|C|959
3JCT|1|1|U|960
3JCT|1|1|C|961
3JCT|1|1|A|962
3JCT|1|1|G|963
3JCT|1|1|G|964
3JCT|1|1|A|965
3JCT|1|1|U|966
3JCT|1|1|A|967
3JCT|1|1|G|968
*
3JCT|1|1|U|1114
3JCT|1|1|G|1115
3JCT|1|1|G|1116
3JCT|1|1|G|1117
*
3JCT|1|1|C|1141
3JCT|1|1|G|1142
3JCT|1|1|A|1143
3JCT|1|1|U|1144
3JCT|1|1|G|1145
3JCT|1|1|C|1146
*
3JCT|1|1|G|1157
3JCT|1|1|A|1158
3JCT|1|1|A|1159
3JCT|1|1|C|1160
3JCT|1|1|G|1161
*
3JCT|1|1|C|1338
3JCT|1|1|C|1339
*
3JCT|1|1|G|1365
3JCT|1|1|A|1366
3JCT|1|1|G|1367
3JCT|1|1|U|1368
3JCT|1|1|A|1369
3JCT|1|1|G|1370
Current chains
- Chain 1
- RDN25-1 rRNA
Nearby chains
- Chain C
- 60S ribosomal protein L4-A
- Chain F
- 60S ribosomal protein L7-A
- Chain T
- 60S ribosomal protein L21-A
- Chain e
- 60S ribosomal protein L32
- Chain f
- 60S ribosomal protein L33-A
- Chain m
- Nucleolar GTP-binding protein 2
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