J6_3JD5_001
3D structure
- PDB id
- 3JD5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the small subunit of the mammalian mitochondrial ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 7 Å
Loop
- Sequence
- CACAGA*UUCGCCAG*CAAAGGACUU*ACACCG*CAAGGUAAG*CUUG
- Length
- 43 nucleotides
- Bulged bases
- 3JD5|1|A|A|452, 3JD5|1|A|A|454, 3JD5|1|A|C|835, 3JD5|1|A|A|836, 3JD5|1|A|C|838, 3JD5|1|A|A|922, 3JD5|1|A|U|925
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
3JD5|1|A|C|451
3JD5|1|A|A|452
3JD5|1|A|C|453
3JD5|1|A|A|454
3JD5|1|A|G|455
3JD5|1|A|A|456
*
3JD5|1|A|U|477
3JD5|1|A|U|478
3JD5|1|A|C|479
3JD5|1|A|G|480
3JD5|1|A|C|481
3JD5|1|A|C|482
3JD5|1|A|A|483
3JD5|1|A|G|484
*
3JD5|1|A|C|511
3JD5|1|A|A|512
3JD5|1|A|A|513
3JD5|1|A|A|514
3JD5|1|A|G|515
3JD5|1|A|G|516
3JD5|1|A|A|517
3JD5|1|A|C|518
3JD5|1|A|U|519
3JD5|1|A|U|520
*
3JD5|1|A|A|834
3JD5|1|A|C|835
3JD5|1|A|A|836
3JD5|1|A|C|837
3JD5|1|A|C|838
3JD5|1|A|G|839
*
3JD5|1|A|C|920
3JD5|1|A|A|921
3JD5|1|A|A|922
3JD5|1|A|G|923
3JD5|1|A|G|924
3JD5|1|A|U|925
3JD5|1|A|A|926
3JD5|1|A|A|927
3JD5|1|A|G|928
*
3JD5|1|A|C|945
3JD5|1|A|U|946
3JD5|1|A|U|947
3JD5|1|A|G|948
Current chains
- Chain A
- 28S ribosomal RNA, mitochondial
Nearby chains
- Chain E
- 28S ribosomal protein S5, mitochondrial
- Chain F
- 28S ribosomal protein S6, mitochondrial
- Chain K
- 28S ribosomal protein S11, mitochondrial
- Chain L
- 28S ribosomal protein S12, mitochondrial
- Chain Q
- 28S ribosomal protein S17, mitochondrial
- Chain U
- 28S ribosomal protein S21, mitochondrial
- Chain c
- 28S ribosomal protein S25, mitochondrial
- Chain m
- Coiled-coil-helix-coiled-coil-helix domain containing 1
- Chain n
- Aurora kinase A interacting protein 1
Coloring options: