J6_3PIP_001

3D structure

PDB id

3PIP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

GGAGC*GGAAC*GGAGAAGAAAG*CGAUU*AUCAG*CUAAAUACUCCC

Length

43 nucleotides

Bulged bases

3PIP|1|X|A|200, 3PIP|1|X|U|444

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3PIP|1|X|G|41
3PIP|1|X|G|42
3PIP|1|X|A|43
3PIP|1|X|G|44
3PIP|1|X|C|45
*
3PIP|1|X|G|156
3PIP|1|X|G|157
3PIP|1|X|A|158
3PIP|1|X|A|159
3PIP|1|X|C|160
*
3PIP|1|X|G|191
3PIP|1|X|G|192
3PIP|1|X|A|193
3PIP|1|X|G|194
3PIP|1|X|A|195
3PIP|1|X|A|196
3PIP|1|X|G|197
3PIP|1|X|A|198
3PIP|1|X|A|199
3PIP|1|X|A|200
3PIP|1|X|G|201
*
3PIP|1|X|C|208
3PIP|1|X|G|209
3PIP|1|X|A|210
3PIP|1|X|U|211
3PIP|1|X|U|212
*
3PIP|1|X|A|239
3PIP|1|X|U|240
3PIP|1|X|C|241
3PIP|1|X|A|242
3PIP|1|X|G|243
*
3PIP|1|X|C|439
3PIP|1|X|U|440
3PIP|1|X|A|441
3PIP|1|X|A|442
3PIP|1|X|A|443
3PIP|1|X|U|444
3PIP|1|X|A|445
3PIP|1|X|C|446
3PIP|1|X|U|447
3PIP|1|X|C|448
3PIP|1|X|C|449
3PIP|1|X|C|450

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain C

50S ribosomal protein L4