J6_3PIP_004
3D structure
- PDB id
- 3PIP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunit
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.45 Å
Loop
- Sequence
- UUUA*UUUG*CG*CGCC*GCUUAGUGAACC*GAUCAACGGAUAAAA
- Length
- 41 nucleotides
- Bulged bases
- 3PIP|1|X|U|2059, 3PIP|1|X|U|2369, 3PIP|1|X|G|2407, 3PIP|1|X|A|2409, 3PIP|1|X|U|2410
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
3PIP|1|X|U|2057
3PIP|1|X|U|2058
3PIP|1|X|U|2059
3PIP|1|X|A|2060
*
3PIP|1|X|U|2222
3PIP|1|X|U|2223
3PIP|1|X|U|2224
3PIP|1|X|G|2225
*
3PIP|1|X|C|2237
3PIP|1|X|G|2238
*
3PIP|1|X|C|2260
3PIP|1|X|G|2261
3PIP|1|X|C|2262
3PIP|1|X|C|2263
*
3PIP|1|X|G|2363
3PIP|1|X|C|2364
3PIP|1|X|U|2365
3PIP|1|X|U|2366
3PIP|1|X|A|2367
3PIP|1|X|G|2368
3PIP|1|X|U|2369
3PIP|1|X|G|2370
3PIP|1|X|A|2371
3PIP|1|X|A|2372
3PIP|1|X|C|2373
3PIP|1|X|C|2374
*
3PIP|1|X|G|2400
3PIP|1|X|A|2401
3PIP|1|X|U|2402
3PIP|1|X|C|2403
3PIP|1|X|A|2404
3PIP|1|X|A|2405
3PIP|1|X|C|2406
3PIP|1|X|G|2407
3PIP|1|X|G|2408
3PIP|1|X|A|2409
3PIP|1|X|U|2410
3PIP|1|X|A|2411
3PIP|1|X|A|2412
3PIP|1|X|A|2413
3PIP|1|X|A|2414
Current chains
- Chain X
- RIBOSOMAL 23S RNA
Nearby chains
- Chain 1
- 50S ribosomal protein L33
- Chain 3
- 50S ribosomal protein L35
- Chain A
- 50S ribosomal protein L2
- Chain I
- 50S ribosomal protein L15
- Chain T
- 50S ribosomal protein L27
- Chain U
- 50S ribosomal protein L28
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