J6_4D61_002
3D structure
- PDB id
- 4D61 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9 Å
Loop
- Sequence
- UGGAUCUUGGGAG*CCCCUUGCCUCUC*GAAGCGUUUACUUUG*CUAGGAAUAAUGGAAUAGGACC*GGCCAUGAUUAAGAG*CAUUA
- Length
- 83 nucleotides
- Bulged bases
- 4D61|1|1|C|687, 4D61|1|1|U|688, 4D61|1|1|U|742, 4D61|1|1|U|743, 4D61|1|1|C|745, 4D61|1|1|C|797, 4D61|1|1|U|871, 4D61|1|1|G|873, 4D61|1|1|A|913, 4D61|1|1|G|921
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4D61|1|1|U|682
4D61|1|1|G|683
4D61|1|1|G|684
4D61|1|1|A|685
4D61|1|1|U|686
4D61|1|1|C|687
4D61|1|1|U|688
4D61|1|1|U|689
4D61|1|1|G|690
4D61|1|1|G|691
4D61|1|1|G|692
4D61|1|1|A|693
4D61|1|1|G|694
*
4D61|1|1|C|738
4D61|1|1|C|739
4D61|1|1|C|740
4D61|1|1|C|741
4D61|1|1|U|742
4D61|1|1|U|743
4D61|1|1|G|744
4D61|1|1|C|745
4D61|1|1|C|746
4D61|1|1|U|747
4D61|1|1|C|748
4D61|1|1|U|749
4D61|1|1|C|750
*
4D61|1|1|G|793
4D61|1|1|A|794
4D61|1|1|A|795
4D61|1|1|G|796
4D61|1|1|C|797
4D61|1|1|G|798
4D61|1|1|U|799
4D61|1|1|U|800
4D61|1|1|U|801
4D61|1|1|A|802
4D61|1|1|C|803
4D61|1|1|U|804
4D61|1|1|U|805
4D61|1|1|U|806
4D61|1|1|G|807
*
4D61|1|1|C|856
4D61|1|1|U|857
4D61|1|1|A|858
4D61|1|1|G|859
4D61|1|1|G|860
4D61|1|1|A|861
4D61|1|1|A|862
4D61|1|1|U|863
4D61|1|1|A|864
4D61|1|1|A|865
4D61|1|1|U|866
4D61|1|1|G|867
4D61|1|1|G|868
4D61|1|1|A|869
4D61|1|1|A|870
4D61|1|1|U|871
4D61|1|1|A|872
4D61|1|1|G|873
4D61|1|1|G|874
4D61|1|1|A|875
4D61|1|1|C|876
4D61|1|1|C|877
*
4D61|1|1|G|909
4D61|1|1|G|910
4D61|1|1|C|911
4D61|1|1|C|912
4D61|1|1|A|913
4D61|1|1|U|914
4D61|1|1|G|915
4D61|1|1|A|916
4D61|1|1|U|917
4D61|1|1|U|918
4D61|1|1|A|919
4D61|1|1|A|920
4D61|1|1|G|921
4D61|1|1|A|922
4D61|1|1|G|923
*
4D61|1|1|C|1019
4D61|1|1|A|1020
4D61|1|1|U|1021
4D61|1|1|U|1022
4D61|1|1|A|1023
Current chains
- Chain 1
- 18S RRNA
Nearby chains
- Chain E
- 40S RIBOSOMAL PROTEIN S4, Y ISOFORM 1
- Chain H
- 40S RIBOSOMAL PROTEIN S7
- Chain L
- 40S RIBOSOMAL PROTEIN S11
- Chain N
- 40S RIBOSOMAL PROTEIN S13
- Chain W
- 40S RIBOSOMAL PROTEIN S15A
- Chain X
- 40S RIBOSOMAL PROTEIN S23
- Chain b
- 40S RIBOSOMAL PROTEIN S27
Coloring options: