J6_4IO9_001

3D structure

PDB id

4IO9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of compound 4d bound to large ribosomal subunit (50S) from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GC*GGAAC*GGAGAAGAAAG*CGAUU*AUCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

4IO9|1|X|A|200

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4IO9|1|X|G|44
4IO9|1|X|C|45
*
4IO9|1|X|G|156
4IO9|1|X|G|157
4IO9|1|X|A|158
4IO9|1|X|A|159
4IO9|1|X|C|160
*
4IO9|1|X|G|191
4IO9|1|X|G|192
4IO9|1|X|A|193
4IO9|1|X|G|194
4IO9|1|X|A|195
4IO9|1|X|A|196
4IO9|1|X|G|197
4IO9|1|X|A|198
4IO9|1|X|A|199
4IO9|1|X|A|200
4IO9|1|X|G|201
*
4IO9|1|X|C|208
4IO9|1|X|G|209
4IO9|1|X|A|210
4IO9|1|X|U|211
4IO9|1|X|U|212
*
4IO9|1|X|A|239
4IO9|1|X|U|240
4IO9|1|X|C|241
4IO9|1|X|A|242
4IO9|1|X|G|243
*
4IO9|1|X|C|439
4IO9|1|X|U|440
4IO9|1|X|A|441
4IO9|1|X|A|442
4IO9|1|X|A|443
4IO9|1|X|U|444
4IO9|1|X|A|445
4IO9|1|X|C|446

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34