J6_4IO9_002
3D structure
- PDB id
- 4IO9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of compound 4d bound to large ribosomal subunit (50S) from Deinococcus radiodurans
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- UUUA*UUUG*CG*CGCC*GCUUAGUGAACC*GAUCAACGGAUAAAA
- Length
- 41 nucleotides
- Bulged bases
- 4IO9|1|X|U|2059, 4IO9|1|X|A|2367, 4IO9|1|X|U|2369, 4IO9|1|X|G|2407, 4IO9|1|X|A|2409, 4IO9|1|X|U|2410
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4IO9|1|X|U|2057
4IO9|1|X|U|2058
4IO9|1|X|U|2059
4IO9|1|X|A|2060
*
4IO9|1|X|U|2222
4IO9|1|X|U|2223
4IO9|1|X|U|2224
4IO9|1|X|G|2225
*
4IO9|1|X|C|2237
4IO9|1|X|G|2238
*
4IO9|1|X|C|2260
4IO9|1|X|G|2261
4IO9|1|X|C|2262
4IO9|1|X|C|2263
*
4IO9|1|X|G|2363
4IO9|1|X|C|2364
4IO9|1|X|U|2365
4IO9|1|X|U|2366
4IO9|1|X|A|2367
4IO9|1|X|G|2368
4IO9|1|X|U|2369
4IO9|1|X|G|2370
4IO9|1|X|A|2371
4IO9|1|X|A|2372
4IO9|1|X|C|2373
4IO9|1|X|C|2374
*
4IO9|1|X|G|2400
4IO9|1|X|A|2401
4IO9|1|X|U|2402
4IO9|1|X|C|2403
4IO9|1|X|A|2404
4IO9|1|X|A|2405
4IO9|1|X|C|2406
4IO9|1|X|G|2407
4IO9|1|X|G|2408
4IO9|1|X|A|2409
4IO9|1|X|U|2410
4IO9|1|X|A|2411
4IO9|1|X|A|2412
4IO9|1|X|A|2413
4IO9|1|X|A|2414
Current chains
- Chain X
- 23S ribosomal RNA
Nearby chains
- Chain 1
- 50S ribosomal protein L33
- Chain 3
- 50S ribosomal protein L35
- Chain A
- 50S ribosomal protein L2
- Chain I
- 50S ribosomal protein L15
- Chain T
- 50S ribosomal protein L27
- Chain U
- 50S ribosomal protein L28
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