3D structure

PDB id
4LFZ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-U in the Absence of Paromomycin
Experimental method
X-RAY DIFFRACTION
Resolution
3.92 Å

Loop

Sequence
UUUA*UUUG*CG*CGCC*GCCUAGUGAACC*GAUCAACGGAUAAAA
Length
41 nucleotides
Bulged bases
4LFZ|1|YA|U|2076, 4LFZ|1|YA|A|2388, 4LFZ|1|YA|G|2428, 4LFZ|1|YA|A|2430, 4LFZ|1|YA|U|2431
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

4LFZ|1|YA|U|2074
4LFZ|1|YA|U|2075
4LFZ|1|YA|U|2076
4LFZ|1|YA|A|2077
*
4LFZ|1|YA|U|2243
4LFZ|1|YA|U|2244
4LFZ|1|YA|U|2245
4LFZ|1|YA|G|2246
*
4LFZ|1|YA|C|2258
4LFZ|1|YA|G|2259
*
4LFZ|1|YA|C|2281
4LFZ|1|YA|G|2282
4LFZ|1|YA|C|2283
4LFZ|1|YA|C|2284
*
4LFZ|1|YA|G|2384
4LFZ|1|YA|C|2385
4LFZ|1|YA|C|2386
4LFZ|1|YA|U|2387
4LFZ|1|YA|A|2388
4LFZ|1|YA|G|2389
4LFZ|1|YA|U|2390
4LFZ|1|YA|G|2391
4LFZ|1|YA|A|2392
4LFZ|1|YA|A|2393
4LFZ|1|YA|C|2394
4LFZ|1|YA|C|2395
*
4LFZ|1|YA|G|2421
4LFZ|1|YA|A|2422
4LFZ|1|YA|U|2423
4LFZ|1|YA|C|2424
4LFZ|1|YA|A|2425
4LFZ|1|YA|A|2426
4LFZ|1|YA|C|2427
4LFZ|1|YA|G|2428
4LFZ|1|YA|G|2429
4LFZ|1|YA|A|2430
4LFZ|1|YA|U|2431
4LFZ|1|YA|A|2432
4LFZ|1|YA|A|2433
4LFZ|1|YA|A|2434
4LFZ|1|YA|A|2435

Current chains

Chain YA
23S rRNA

Nearby chains

Chain Y0
50S ribosomal protein L27
Chain Y1
50S ribosomal protein L28
Chain Y6
50S ribosomal protein L33
Chain Y8
50S ribosomal protein L35
Chain YD
50S ribosomal protein L2
Chain YP
50S ribosomal protein L15

Coloring options:

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