3D structure

PDB id
4P6F (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the peptolide 12C bound to bacterial ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.6 Å

Loop

Sequence
UUUA*UUUG*CG*CGCC*GCCUAGUGAACC*GAUCAACGGAUAAAA
Length
41 nucleotides
Bulged bases
4P6F|1|YA|U|2076, 4P6F|1|YA|A|2388, 4P6F|1|YA|U|2390, 4P6F|1|YA|G|2428, 4P6F|1|YA|A|2430, 4P6F|1|YA|U|2431
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

4P6F|1|YA|U|2074
4P6F|1|YA|U|2075
4P6F|1|YA|U|2076
4P6F|1|YA|A|2077
*
4P6F|1|YA|U|2243
4P6F|1|YA|U|2244
4P6F|1|YA|U|2245
4P6F|1|YA|G|2246
*
4P6F|1|YA|C|2258
4P6F|1|YA|G|2259
*
4P6F|1|YA|C|2281
4P6F|1|YA|G|2282
4P6F|1|YA|C|2283
4P6F|1|YA|C|2284
*
4P6F|1|YA|G|2384
4P6F|1|YA|C|2385
4P6F|1|YA|C|2386
4P6F|1|YA|U|2387
4P6F|1|YA|A|2388
4P6F|1|YA|G|2389
4P6F|1|YA|U|2390
4P6F|1|YA|G|2391
4P6F|1|YA|A|2392
4P6F|1|YA|A|2393
4P6F|1|YA|C|2394
4P6F|1|YA|C|2395
*
4P6F|1|YA|G|2421
4P6F|1|YA|A|2422
4P6F|1|YA|U|2423
4P6F|1|YA|C|2424
4P6F|1|YA|A|2425
4P6F|1|YA|A|2426
4P6F|1|YA|C|2427
4P6F|1|YA|G|2428
4P6F|1|YA|G|2429
4P6F|1|YA|A|2430
4P6F|1|YA|U|2431
4P6F|1|YA|A|2432
4P6F|1|YA|A|2433
4P6F|1|YA|A|2434
4P6F|1|YA|A|2435

Current chains

Chain YA
23S ribosomal RNA

Nearby chains

Chain XW
Transfer RNA; tRNA
Chain Y0
50S ribosomal protein L27
Chain Y1
50S ribosomal protein L28
Chain Y6
50S ribosomal protein L33
Chain Y8
50S ribosomal protein L35
Chain YD
50S ribosomal protein L2
Chain YP
50S ribosomal protein L15

Coloring options:

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