J6_4U1V_003

3D structure

PDB id

4U1V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to linopristin.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

4U1V|1|DA|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4U1V|1|DA|G|45
4U1V|1|DA|G|46
*
4U1V|1|DA|C|179
4U1V|1|DA|G|180
4U1V|1|DA|A|181
4U1V|1|DA|A|182
4U1V|1|DA|C|183
*
4U1V|1|DA|G|214
4U1V|1|DA|G|215
4U1V|1|DA|A|216
4U1V|1|DA|A|217
4U1V|1|DA|A|218
4U1V|1|DA|A|219
4U1V|1|DA|G|220
4U1V|1|DA|A|221
4U1V|1|DA|A|222
4U1V|1|DA|A|223
4U1V|1|DA|U|224
*
4U1V|1|DA|A|231
4U1V|1|DA|G|232
4U1V|1|DA|A|233
4U1V|1|DA|U|234
4U1V|1|DA|U|235
*
4U1V|1|DA|A|262
4U1V|1|DA|G|263
4U1V|1|DA|C|264
4U1V|1|DA|A|265
4U1V|1|DA|G|266
*
4U1V|1|DA|C|426
4U1V|1|DA|U|427
4U1V|1|DA|A|428
4U1V|1|DA|A|429
4U1V|1|DA|A|430
4U1V|1|DA|U|431
4U1V|1|DA|A|432
4U1V|1|DA|C|433

Current chains

Chain DA

23S rRNA

Nearby chains

Chain D2

50S ribosomal protein L34