3D structure

PDB id
4U1V (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the E. coli ribosome bound to linopristin.
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
UUUA*UUUG*CU*AGCA*UCAUAGUGAUCC*GCUCAACGGAUAAAA
Length
41 nucleotides
Bulged bases
4U1V|1|DA|U|2076, 4U1V|1|DA|A|2388, 4U1V|1|DA|U|2390, 4U1V|1|DA|G|2428, 4U1V|1|DA|A|2430
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

4U1V|1|DA|U|2074
4U1V|1|DA|U|2075
4U1V|1|DA|U|2076
4U1V|1|DA|A|2077
*
4U1V|1|DA|U|2243
4U1V|1|DA|U|2244
4U1V|1|DA|U|2245
4U1V|1|DA|G|2246
*
4U1V|1|DA|C|2258
4U1V|1|DA|U|2259
*
4U1V|1|DA|A|2281
4U1V|1|DA|G|2282
4U1V|1|DA|C|2283
4U1V|1|DA|A|2284
*
4U1V|1|DA|U|2384
4U1V|1|DA|C|2385
4U1V|1|DA|A|2386
4U1V|1|DA|U|2387
4U1V|1|DA|A|2388
4U1V|1|DA|G|2389
4U1V|1|DA|U|2390
4U1V|1|DA|G|2391
4U1V|1|DA|A|2392
4U1V|1|DA|U|2393
4U1V|1|DA|C|2394
4U1V|1|DA|C|2395
*
4U1V|1|DA|G|2421
4U1V|1|DA|C|2422
4U1V|1|DA|U|2423
4U1V|1|DA|C|2424
4U1V|1|DA|A|2425
4U1V|1|DA|A|2426
4U1V|1|DA|C|2427
4U1V|1|DA|G|2428
4U1V|1|DA|G|2429
4U1V|1|DA|A|2430
4U1V|1|DA|U|2431
4U1V|1|DA|A|2432
4U1V|1|DA|A|2433
4U1V|1|DA|A|2434
4U1V|1|DA|A|2435

Current chains

Chain DA
23S rRNA

Nearby chains

Chain D1
50S ribosomal protein L33
Chain D3
50S ribosomal protein L35
Chain DC
50S ribosomal protein L2
Chain DL
50S ribosomal protein L15
Chain DW
50S ribosomal protein L27
Chain DX
50S ribosomal protein L28

Coloring options:

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