J6_4U20_005

3D structure

PDB id

4U20 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to flopristin.

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

4U20|1|DA|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4U20|1|DA|G|45
4U20|1|DA|G|46
*
4U20|1|DA|C|179
4U20|1|DA|G|180
4U20|1|DA|A|181
4U20|1|DA|A|182
4U20|1|DA|C|183
*
4U20|1|DA|G|214
4U20|1|DA|G|215
4U20|1|DA|A|216
4U20|1|DA|A|217
4U20|1|DA|A|218
4U20|1|DA|A|219
4U20|1|DA|G|220
4U20|1|DA|A|221
4U20|1|DA|A|222
4U20|1|DA|A|223
4U20|1|DA|U|224
*
4U20|1|DA|A|231
4U20|1|DA|G|232
4U20|1|DA|A|233
4U20|1|DA|U|234
4U20|1|DA|U|235
*
4U20|1|DA|A|262
4U20|1|DA|G|263
4U20|1|DA|C|264
4U20|1|DA|A|265
4U20|1|DA|G|266
*
4U20|1|DA|C|426
4U20|1|DA|U|427
4U20|1|DA|A|428
4U20|1|DA|A|429
4U20|1|DA|A|430
4U20|1|DA|U|431
4U20|1|DA|A|432
4U20|1|DA|C|433

Current chains

Chain DA

23S rRNA

Nearby chains

Chain D2

50S ribosomal protein L34