J6_4U25_001

3D structure

PDB id

4U25 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to virginiamycin M1.

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

4U25|1|BA|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4U25|1|BA|G|45
4U25|1|BA|G|46
*
4U25|1|BA|C|179
4U25|1|BA|G|180
4U25|1|BA|A|181
4U25|1|BA|A|182
4U25|1|BA|C|183
*
4U25|1|BA|G|214
4U25|1|BA|G|215
4U25|1|BA|A|216
4U25|1|BA|A|217
4U25|1|BA|A|218
4U25|1|BA|A|219
4U25|1|BA|G|220
4U25|1|BA|A|221
4U25|1|BA|A|222
4U25|1|BA|A|223
4U25|1|BA|U|224
*
4U25|1|BA|A|231
4U25|1|BA|G|232
4U25|1|BA|A|233
4U25|1|BA|U|234
4U25|1|BA|U|235
*
4U25|1|BA|A|262
4U25|1|BA|G|263
4U25|1|BA|C|264
4U25|1|BA|A|265
4U25|1|BA|G|266
*
4U25|1|BA|C|426
4U25|1|BA|U|427
4U25|1|BA|A|428
4U25|1|BA|A|429
4U25|1|BA|A|430
4U25|1|BA|U|431
4U25|1|BA|A|432
4U25|1|BA|C|433

Current chains

Chain BA

23S rRNA

Nearby chains

Chain B2

50S ribosomal protein L34