J6_4U25_004
3D structure
- PDB id
- 4U25 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the E. coli ribosome bound to virginiamycin M1.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- UUUAC*GUUUG*CU*AGCA*UCAUAGUGAUCC*GCUCAACGGAUAAAA
- Length
- 43 nucleotides
- Bulged bases
- 4U25|1|DA|U|2076, 4U25|1|DA|U|2390, 4U25|1|DA|G|2428, 4U25|1|DA|A|2430, 4U25|1|DA|U|2431
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4U25|1|DA|U|2074
4U25|1|DA|U|2075
4U25|1|DA|U|2076
4U25|1|DA|A|2077
4U25|1|DA|C|2078
*
4U25|1|DA|G|2242
4U25|1|DA|U|2243
4U25|1|DA|U|2244
4U25|1|DA|U|2245
4U25|1|DA|G|2246
*
4U25|1|DA|C|2258
4U25|1|DA|U|2259
*
4U25|1|DA|A|2281
4U25|1|DA|G|2282
4U25|1|DA|C|2283
4U25|1|DA|A|2284
*
4U25|1|DA|U|2384
4U25|1|DA|C|2385
4U25|1|DA|A|2386
4U25|1|DA|U|2387
4U25|1|DA|A|2388
4U25|1|DA|G|2389
4U25|1|DA|U|2390
4U25|1|DA|G|2391
4U25|1|DA|A|2392
4U25|1|DA|U|2393
4U25|1|DA|C|2394
4U25|1|DA|C|2395
*
4U25|1|DA|G|2421
4U25|1|DA|C|2422
4U25|1|DA|U|2423
4U25|1|DA|C|2424
4U25|1|DA|A|2425
4U25|1|DA|A|2426
4U25|1|DA|C|2427
4U25|1|DA|G|2428
4U25|1|DA|G|2429
4U25|1|DA|A|2430
4U25|1|DA|U|2431
4U25|1|DA|A|2432
4U25|1|DA|A|2433
4U25|1|DA|A|2434
4U25|1|DA|A|2435
Current chains
- Chain DA
- 23S rRNA
Nearby chains
- Chain D1
- 50S ribosomal protein L33
- Chain D3
- 50S ribosomal protein L35
- Chain DC
- 50S ribosomal protein L2
- Chain DL
- 50S ribosomal protein L15
- Chain DW
- 50S ribosomal protein L27
- Chain DX
- 50S ribosomal protein L28
Coloring options: