J6_4U3M_003

3D structure

PDB id

4U3M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Anisomycin bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GAGUAC*GGAAAAGAAAC*GGAUU*AAAAG*CUAAAUAUUGG*CAUC

Length

42 nucleotides

Bulged bases

4U3M|1|5|A|67, 4U3M|1|5|U|329, 4U3M|1|8|U|34

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4U3M|1|5|G|22
4U3M|1|5|A|23
4U3M|1|5|G|24
4U3M|1|5|U|25
4U3M|1|5|A|26
4U3M|1|5|C|27
*
4U3M|1|5|G|58
4U3M|1|5|G|59
4U3M|1|5|A|60
4U3M|1|5|A|61
4U3M|1|5|A|62
4U3M|1|5|A|63
4U3M|1|5|G|64
4U3M|1|5|A|65
4U3M|1|5|A|66
4U3M|1|5|A|67
4U3M|1|5|C|68
*
4U3M|1|5|G|75
4U3M|1|5|G|76
4U3M|1|5|A|77
4U3M|1|5|U|78
4U3M|1|5|U|79
*
4U3M|1|5|A|106
4U3M|1|5|A|107
4U3M|1|5|A|108
4U3M|1|5|A|109
4U3M|1|5|G|110
*
4U3M|1|5|C|321
4U3M|1|5|U|322
4U3M|1|5|A|323
4U3M|1|5|A|324
4U3M|1|5|A|325
4U3M|1|5|U|326
4U3M|1|5|A|327
4U3M|1|5|U|328
4U3M|1|5|U|329
4U3M|1|5|G|330
4U3M|1|5|G|331
*
4U3M|1|8|C|32
4U3M|1|8|A|33
4U3M|1|8|U|34
4U3M|1|8|C|35

Current chains

Chain 5

25s rRNA

Chain 8

5.8s rRNA

Nearby chains

Chain l4

60S ribosomal protein L4-A

Chain m3

60S ribosomal protein L13-A

Chain m5

60S ribosomal protein L15-A

Chain o5

60S ribosomal protein L35-A

Chain o6

60S ribosomal protein L36-A

Chain o7

60S ribosomal protein L37-A