J6_4U3N_003

3D structure

PDB id

4U3N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of CCA trinucleotide bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GAGUAC*GGAAAAGAAAC*GGAUU*AAAAG*CUAAAUAUUGG*CAUC

Length

42 nucleotides

Bulged bases

4U3N|1|5|A|67, 4U3N|1|5|U|329, 4U3N|1|8|U|34

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4U3N|1|5|G|22
4U3N|1|5|A|23
4U3N|1|5|G|24
4U3N|1|5|U|25
4U3N|1|5|A|26
4U3N|1|5|C|27
*
4U3N|1|5|G|58
4U3N|1|5|G|59
4U3N|1|5|A|60
4U3N|1|5|A|61
4U3N|1|5|A|62
4U3N|1|5|A|63
4U3N|1|5|G|64
4U3N|1|5|A|65
4U3N|1|5|A|66
4U3N|1|5|A|67
4U3N|1|5|C|68
*
4U3N|1|5|G|75
4U3N|1|5|G|76
4U3N|1|5|A|77
4U3N|1|5|U|78
4U3N|1|5|U|79
*
4U3N|1|5|A|106
4U3N|1|5|A|107
4U3N|1|5|A|108
4U3N|1|5|A|109
4U3N|1|5|G|110
*
4U3N|1|5|C|321
4U3N|1|5|U|322
4U3N|1|5|A|323
4U3N|1|5|A|324
4U3N|1|5|A|325
4U3N|1|5|U|326
4U3N|1|5|A|327
4U3N|1|5|U|328
4U3N|1|5|U|329
4U3N|1|5|G|330
4U3N|1|5|G|331
*
4U3N|1|8|C|32
4U3N|1|8|A|33
4U3N|1|8|U|34
4U3N|1|8|C|35

Current chains

Chain 5

25S ribosomal RNA

Chain 8

5.8S ribosomal RNA

Nearby chains

Chain l4

60S ribosomal protein L4-A

Chain m3

60S ribosomal protein L13-A

Chain m5

60S ribosomal protein L15-A

Chain o5

60S ribosomal protein L35-A

Chain o6

60S ribosomal protein L36-A

Chain o7

60S ribosomal protein L37-A