J6_4U4R_003

3D structure

PDB id

4U4R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Lactimidomycin bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GAGUAC*GGAAAAGAAAC*GGAUU*AAAAG*CUAAAUAUUGG*CAUC

Length

42 nucleotides

Bulged bases

4U4R|1|5|A|67, 4U4R|1|5|U|329, 4U4R|1|8|U|34

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4U4R|1|5|G|22
4U4R|1|5|A|23
4U4R|1|5|G|24
4U4R|1|5|U|25
4U4R|1|5|A|26
4U4R|1|5|C|27
*
4U4R|1|5|G|58
4U4R|1|5|G|59
4U4R|1|5|A|60
4U4R|1|5|A|61
4U4R|1|5|A|62
4U4R|1|5|A|63
4U4R|1|5|G|64
4U4R|1|5|A|65
4U4R|1|5|A|66
4U4R|1|5|A|67
4U4R|1|5|C|68
*
4U4R|1|5|G|75
4U4R|1|5|G|76
4U4R|1|5|A|77
4U4R|1|5|U|78
4U4R|1|5|U|79
*
4U4R|1|5|A|106
4U4R|1|5|A|107
4U4R|1|5|A|108
4U4R|1|5|A|109
4U4R|1|5|G|110
*
4U4R|1|5|C|321
4U4R|1|5|U|322
4U4R|1|5|A|323
4U4R|1|5|A|324
4U4R|1|5|A|325
4U4R|1|5|U|326
4U4R|1|5|A|327
4U4R|1|5|U|328
4U4R|1|5|U|329
4U4R|1|5|G|330
4U4R|1|5|G|331
*
4U4R|1|8|C|32
4U4R|1|8|A|33
4U4R|1|8|U|34
4U4R|1|8|C|35

Current chains

Chain 5

25S ribosomal RNA

Chain 8

5.8S ribosomal RNA

Nearby chains

Chain l4

60S ribosomal protein L4-A

Chain m3

60S ribosomal protein L13-A

Chain m5

60S ribosomal protein L15-A

Chain o5

60S ribosomal protein L35-A

Chain o6

60S ribosomal protein L36-A

Chain o7

60S ribosomal protein L37-A