3D structure

PDB id
4U53 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of Deoxynivalenol bound to the yeast 80S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.3 Å

Loop

Sequence
GAGUAC*GGAAAAGAAAC*GGAUU*AAAAG*CUAAAUAUUGG*CAUC
Length
42 nucleotides
Bulged bases
4U53|1|5|A|67, 4U53|1|5|U|329, 4U53|1|8|U|34
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

4U53|1|5|G|22
4U53|1|5|A|23
4U53|1|5|G|24
4U53|1|5|U|25
4U53|1|5|A|26
4U53|1|5|C|27
*
4U53|1|5|G|58
4U53|1|5|G|59
4U53|1|5|A|60
4U53|1|5|A|61
4U53|1|5|A|62
4U53|1|5|A|63
4U53|1|5|G|64
4U53|1|5|A|65
4U53|1|5|A|66
4U53|1|5|A|67
4U53|1|5|C|68
*
4U53|1|5|G|75
4U53|1|5|G|76
4U53|1|5|A|77
4U53|1|5|U|78
4U53|1|5|U|79
*
4U53|1|5|A|106
4U53|1|5|A|107
4U53|1|5|A|108
4U53|1|5|A|109
4U53|1|5|G|110
*
4U53|1|5|C|321
4U53|1|5|U|322
4U53|1|5|A|323
4U53|1|5|A|324
4U53|1|5|A|325
4U53|1|5|U|326
4U53|1|5|A|327
4U53|1|5|U|328
4U53|1|5|U|329
4U53|1|5|G|330
4U53|1|5|G|331
*
4U53|1|8|C|32
4U53|1|8|A|33
4U53|1|8|U|34
4U53|1|8|C|35

Current chains

Chain 5
25S ribosomal RNA
Chain 8
5.8S ribosomal RNA

Nearby chains

Chain l4
60S ribosomal protein L4-A
Chain m3
60S ribosomal protein L13-A
Chain m5
60S ribosomal protein L15-A
Chain o5
60S ribosomal protein L35-A
Chain o6
60S ribosomal protein L36-A
Chain o7
60S ribosomal protein L37-A

Coloring options:

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