J6_4V4G_001

3D structure

PDB id

4V4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of five 70s ribosomes from Escherichia Coli in complex with protein Y.

Experimental method

X-RAY DIFFRACTION

Resolution

11.5 Å

Loop

Sequence

GC*GGAAC*GGAGAAGAAAG*CGAUU*AUCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

4V4G|1|BB|G|197, 4V4G|1|BB|A|200, 4V4G|1|BB|G|209, 4V4G|1|BB|C|241

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V4G|1|BB|G|44
4V4G|1|BB|C|45
*
4V4G|1|BB|G|156
4V4G|1|BB|G|157
4V4G|1|BB|A|158
4V4G|1|BB|A|159
4V4G|1|BB|C|160
*
4V4G|1|BB|G|191
4V4G|1|BB|G|192
4V4G|1|BB|A|193
4V4G|1|BB|G|194
4V4G|1|BB|A|195
4V4G|1|BB|A|196
4V4G|1|BB|G|197
4V4G|1|BB|A|198
4V4G|1|BB|A|199
4V4G|1|BB|A|200
4V4G|1|BB|G|201
*
4V4G|1|BB|C|208
4V4G|1|BB|G|209
4V4G|1|BB|A|210
4V4G|1|BB|U|211
4V4G|1|BB|U|212
*
4V4G|1|BB|A|239
4V4G|1|BB|U|240
4V4G|1|BB|C|241
4V4G|1|BB|A|242
4V4G|1|BB|G|243
*
4V4G|1|BB|C|439
4V4G|1|BB|U|440
4V4G|1|BB|A|441
4V4G|1|BB|A|442
4V4G|1|BB|A|443
4V4G|1|BB|U|444
4V4G|1|BB|A|445
4V4G|1|BB|C|446

Current chains

Chain BB

23S RIBOSOMAL RNA

Nearby chains

Chain B4

50S ribosomal protein L34