J6_4V4H_001

3D structure

PDB id

4V4H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with the antibiotic kasugamyin at 3.5A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3.46 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

4V4H|1|BB|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V4H|1|BB|G|45
4V4H|1|BB|G|46
*
4V4H|1|BB|C|179
4V4H|1|BB|G|180
4V4H|1|BB|A|181
4V4H|1|BB|A|182
4V4H|1|BB|C|183
*
4V4H|1|BB|G|214
4V4H|1|BB|G|215
4V4H|1|BB|A|216
4V4H|1|BB|A|217
4V4H|1|BB|A|218
4V4H|1|BB|A|219
4V4H|1|BB|G|220
4V4H|1|BB|A|221
4V4H|1|BB|A|222
4V4H|1|BB|A|223
4V4H|1|BB|U|224
*
4V4H|1|BB|A|231
4V4H|1|BB|G|232
4V4H|1|BB|A|233
4V4H|1|BB|U|234
4V4H|1|BB|U|235
*
4V4H|1|BB|A|262
4V4H|1|BB|G|263
4V4H|1|BB|C|264
4V4H|1|BB|A|265
4V4H|1|BB|G|266
*
4V4H|1|BB|C|426
4V4H|1|BB|U|427
4V4H|1|BB|A|428
4V4H|1|BB|A|429
4V4H|1|BB|A|430
4V4H|1|BB|U|431
4V4H|1|BB|A|432
4V4H|1|BB|C|433

Current chains

Chain BB

23S RIBOSOMAL RNA

Nearby chains

Chain B2

50S RIBOSOMAL PROTEIN L34