J6_4V4Q_001

3D structure

PDB id

4V4Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli at 3.5 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3.46 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

4V4Q|1|BB|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V4Q|1|BB|G|45
4V4Q|1|BB|G|46
*
4V4Q|1|BB|C|179
4V4Q|1|BB|G|180
4V4Q|1|BB|A|181
4V4Q|1|BB|A|182
4V4Q|1|BB|C|183
*
4V4Q|1|BB|G|214
4V4Q|1|BB|G|215
4V4Q|1|BB|A|216
4V4Q|1|BB|A|217
4V4Q|1|BB|A|218
4V4Q|1|BB|A|219
4V4Q|1|BB|G|220
4V4Q|1|BB|A|221
4V4Q|1|BB|A|222
4V4Q|1|BB|A|223
4V4Q|1|BB|U|224
*
4V4Q|1|BB|A|231
4V4Q|1|BB|G|232
4V4Q|1|BB|A|233
4V4Q|1|BB|U|234
4V4Q|1|BB|U|235
*
4V4Q|1|BB|A|262
4V4Q|1|BB|G|263
4V4Q|1|BB|C|264
4V4Q|1|BB|A|265
4V4Q|1|BB|G|266
*
4V4Q|1|BB|C|426
4V4Q|1|BB|U|427
4V4Q|1|BB|A|428
4V4Q|1|BB|A|429
4V4Q|1|BB|A|430
4V4Q|1|BB|U|431
4V4Q|1|BB|A|432
4V4Q|1|BB|C|433

Current chains

Chain BB

23S ribosomal RNA

Nearby chains

Chain B2

50S ribosomal protein L34