J6_4V4T_001

3D structure

PDB id

4V4T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the whole ribosomal complex with a stop codon in the A-site.

Experimental method

X-RAY DIFFRACTION

Resolution

6.46 Å

Loop

Sequence

GC*GGAAC*GGAGAGGAAAG*CGACU*ACCAG*CUAAGUAC

Length

36 nucleotides

Bulged bases

4V4T|1|BA|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V4T|1|BA|G|45
4V4T|1|BA|C|46
*
4V4T|1|BA|G|179
4V4T|1|BA|G|180
4V4T|1|BA|A|181
4V4T|1|BA|A|182
4V4T|1|BA|C|183
*
4V4T|1|BA|G|214
4V4T|1|BA|G|215
4V4T|1|BA|A|216
4V4T|1|BA|G|217
4V4T|1|BA|A|218
4V4T|1|BA|G|219
4V4T|1|BA|G|220
4V4T|1|BA|A|221
4V4T|1|BA|A|222
4V4T|1|BA|A|223
4V4T|1|BA|G|224
*
4V4T|1|BA|C|231
4V4T|1|BA|G|232
4V4T|1|BA|A|233
4V4T|1|BA|C|234
4V4T|1|BA|U|235
*
4V4T|1|BA|A|262
4V4T|1|BA|C|263
4V4T|1|BA|C|264
4V4T|1|BA|A|265
4V4T|1|BA|G|266
*
4V4T|1|BA|C|426
4V4T|1|BA|U|427
4V4T|1|BA|A|428
4V4T|1|BA|A|429
4V4T|1|BA|G|430
4V4T|1|BA|U|431
4V4T|1|BA|A|432
4V4T|1|BA|C|433

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B7

50S ribosomal protein L34

Chain BF

50S ribosomal protein L4