J6_4V4T_003
3D structure
- PDB id
- 4V4T (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the whole ribosomal complex with a stop codon in the A-site.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 6.46 Å
Loop
- Sequence
- UUUA*UUUGACUGGGGCGGUCG*CGC*GCAA*UAGUGAACC*GAUCAACGGAUAAAA
- Length
- 52 nucleotides
- Bulged bases
- 4V4T|1|BA|U|2076, 4V4T|1|BA|G|2250, 4V4T|1|BA|C|2326, 4V4T|1|BA|G|2428, 4V4T|1|BA|A|2430, 4V4T|1|BA|U|2431, 4V4T|1|BA|A|2432, 4V4T|1|BA|A|2433
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4V4T|1|BA|U|2074
4V4T|1|BA|U|2075
4V4T|1|BA|U|2076
4V4T|1|BA|A|2077
*
4V4T|1|BA|U|2243
4V4T|1|BA|U|2244
4V4T|1|BA|U|2245
4V4T|1|BA|G|2246
4V4T|1|BA|A|2247
4V4T|1|BA|C|2248
4V4T|1|BA|U|2249
4V4T|1|BA|G|2250
4V4T|1|BA|G|2251
4V4T|1|BA|G|2252
4V4T|1|BA|G|2253
4V4T|1|BA|C|2254
4V4T|1|BA|G|2255
4V4T|1|BA|G|2256
4V4T|1|BA|U|2257
4V4T|1|BA|C|2258
4V4T|1|BA|G|2259
*
4V4T|1|BA|C|2281
4V4T|1|BA|G|2282
4V4T|1|BA|C|2283
*
4V4T|1|BA|G|2325
4V4T|1|BA|C|2326
4V4T|1|BA|A|2327
4V4T|1|BA|A|2328
*
4V4T|1|BA|U|2387
4V4T|1|BA|A|2388
4V4T|1|BA|G|2389
4V4T|1|BA|U|2390
4V4T|1|BA|G|2391
4V4T|1|BA|A|2392
4V4T|1|BA|A|2393
4V4T|1|BA|C|2394
4V4T|1|BA|C|2395
*
4V4T|1|BA|G|2421
4V4T|1|BA|A|2422
4V4T|1|BA|U|2423
4V4T|1|BA|C|2424
4V4T|1|BA|A|2425
4V4T|1|BA|A|2426
4V4T|1|BA|C|2427
4V4T|1|BA|G|2428
4V4T|1|BA|G|2429
4V4T|1|BA|A|2430
4V4T|1|BA|U|2431
4V4T|1|BA|A|2432
4V4T|1|BA|A|2433
4V4T|1|BA|A|2434
4V4T|1|BA|A|2435
Current chains
- Chain BA
- 23S ribosomal RNA
Nearby chains
- Chain AV
- Transfer RNA; tRNA
- Chain AW
- Transfer RNA; tRNA
- Chain B0
- 50S ribosomal protein L27
- Chain B4
- 50S ribosomal protein L31
- Chain B6
- 50S ribosomal protein L33
- Chain B8
- 50S ribosomal protein L35
- Chain BD
- 50S ribosomal protein L2
- Chain BP
- 50S ribosomal protein L15
- Chain BQ
- 50S ribosomal protein L16
Coloring options: