J6_4V4Y_003

3D structure

PDB id

4V4Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 70S Thermus thermophilus ribosome with translocated and rotated Shine-Dalgarno Duplex.

Experimental method

X-RAY DIFFRACTION

Resolution

5.5 Å

Loop

Sequence

GC*GGAAC*GAGAGGAAAG*CGACU*ACCA*UAAGUAC

Length

33 nucleotides

Bulged bases

4V4Y|1|BA|A|223, 4V4Y|1|BA|C|263, 4V4Y|1|BA|C|264

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V4Y|1|BA|G|45
4V4Y|1|BA|C|46
*
4V4Y|1|BA|G|179
4V4Y|1|BA|G|180
4V4Y|1|BA|A|181
4V4Y|1|BA|A|182
4V4Y|1|BA|C|183
*
4V4Y|1|BA|G|215
4V4Y|1|BA|A|216
4V4Y|1|BA|G|217
4V4Y|1|BA|A|218
4V4Y|1|BA|G|219
4V4Y|1|BA|G|220
4V4Y|1|BA|A|221
4V4Y|1|BA|A|222
4V4Y|1|BA|A|223
4V4Y|1|BA|G|224
*
4V4Y|1|BA|C|231
4V4Y|1|BA|G|232
4V4Y|1|BA|A|233
4V4Y|1|BA|C|234
4V4Y|1|BA|U|235
*
4V4Y|1|BA|A|262
4V4Y|1|BA|C|263
4V4Y|1|BA|C|264
4V4Y|1|BA|A|265
*
4V4Y|1|BA|U|427
4V4Y|1|BA|A|428
4V4Y|1|BA|A|429
4V4Y|1|BA|G|430
4V4Y|1|BA|U|431
4V4Y|1|BA|A|432
4V4Y|1|BA|C|433

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B6

50S ribosomal protein L34