J6_4V4Z_001

3D structure

PDB id

4V4Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Thermus thermophilous ribosome functional complex with mRNA and E- and P-site tRNAs at 4.5A.

Experimental method

X-RAY DIFFRACTION

Resolution

4.51 Å

Loop

Sequence

UUUA*UUUG*CG*CGCC*GCCUAGUGAACC*GAUCAACGGAUAAAA

Length

41 nucleotides

Bulged bases

4V4Z|1|BA|U|2075, 4V4Z|1|BA|U|2076, 4V4Z|1|BA|A|2388, 4V4Z|1|BA|U|2390, 4V4Z|1|BA|C|2424, 4V4Z|1|BA|G|2428, 4V4Z|1|BA|A|2430, 4V4Z|1|BA|U|2431

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V4Z|1|BA|U|2074
4V4Z|1|BA|U|2075
4V4Z|1|BA|U|2076
4V4Z|1|BA|A|2077
*
4V4Z|1|BA|U|2243
4V4Z|1|BA|U|2244
4V4Z|1|BA|U|2245
4V4Z|1|BA|G|2246
*
4V4Z|1|BA|C|2258
4V4Z|1|BA|G|2259
*
4V4Z|1|BA|C|2281
4V4Z|1|BA|G|2282
4V4Z|1|BA|C|2283
4V4Z|1|BA|C|2284
*
4V4Z|1|BA|G|2384
4V4Z|1|BA|C|2385
4V4Z|1|BA|C|2386
4V4Z|1|BA|U|2387
4V4Z|1|BA|A|2388
4V4Z|1|BA|G|2389
4V4Z|1|BA|U|2390
4V4Z|1|BA|G|2391
4V4Z|1|BA|A|2392
4V4Z|1|BA|A|2393
4V4Z|1|BA|C|2394
4V4Z|1|BA|C|2395
*
4V4Z|1|BA|G|2421
4V4Z|1|BA|A|2422
4V4Z|1|BA|U|2423
4V4Z|1|BA|C|2424
4V4Z|1|BA|A|2425
4V4Z|1|BA|A|2426
4V4Z|1|BA|C|2427
4V4Z|1|BA|G|2428
4V4Z|1|BA|G|2429
4V4Z|1|BA|A|2430
4V4Z|1|BA|U|2431
4V4Z|1|BA|A|2432
4V4Z|1|BA|A|2433
4V4Z|1|BA|A|2434
4V4Z|1|BA|A|2435

Current chains

Chain BA

23S rRNA

Nearby chains

Chain AD

Transfer RNA; tRNA

Chain B3

50S RIBOSOMAL PROTEIN L31

Chain B5

50S RIBOSOMAL PROTEIN L33

Chain B7

50S RIBOSOMAL PROTEIN L35

Chain BD

50S RIBOSOMAL PROTEIN L2

Chain BO

50S RIBOSOMAL PROTEIN L15

Chain BZ

50S RIBOSOMAL PROTEIN L27