J6_4V50_002

3D structure

PDB id

4V50 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Ribosome with messenger RNA and the Anticodon stem-loop of P-site tRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.22 Å

Loop

Sequence

UUUA*UUUG*CU*AGCA*UCAUAGUGAUCC*GCUCAACGGAUAAAA

Length

41 nucleotides

Bulged bases

4V50|1|BB|U|2076, 4V50|1|BB|A|2388, 4V50|1|BB|G|2428, 4V50|1|BB|A|2430, 4V50|1|BB|U|2431

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V50|1|BB|U|2074
4V50|1|BB|U|2075
4V50|1|BB|U|2076
4V50|1|BB|A|2077
*
4V50|1|BB|U|2243
4V50|1|BB|U|2244
4V50|1|BB|U|2245
4V50|1|BB|G|2246
*
4V50|1|BB|C|2258
4V50|1|BB|U|2259
*
4V50|1|BB|A|2281
4V50|1|BB|G|2282
4V50|1|BB|C|2283
4V50|1|BB|A|2284
*
4V50|1|BB|U|2384
4V50|1|BB|C|2385
4V50|1|BB|A|2386
4V50|1|BB|U|2387
4V50|1|BB|A|2388
4V50|1|BB|G|2389
4V50|1|BB|U|2390
4V50|1|BB|G|2391
4V50|1|BB|A|2392
4V50|1|BB|U|2393
4V50|1|BB|C|2394
4V50|1|BB|C|2395
*
4V50|1|BB|G|2421
4V50|1|BB|C|2422
4V50|1|BB|U|2423
4V50|1|BB|C|2424
4V50|1|BB|A|2425
4V50|1|BB|A|2426
4V50|1|BB|C|2427
4V50|1|BB|G|2428
4V50|1|BB|G|2429
4V50|1|BB|A|2430
4V50|1|BB|U|2431
4V50|1|BB|A|2432
4V50|1|BB|A|2433
4V50|1|BB|A|2434
4V50|1|BB|A|2435

Current chains

Chain BB

23S ribosomal RNA

Nearby chains

Chain B1

50S ribosomal protein L33

Chain B3

50S ribosomal protein L35

Chain BC

50S ribosomal protein L2

Chain BL

50S ribosomal protein L15

Chain BW

50S ribosomal protein L27

Chain BX

50S ribosomal protein L28