J6_4V52_003

3D structure

PDB id

4V52 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with neomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.21 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

4V52|1|DB|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V52|1|DB|G|45
4V52|1|DB|G|46
*
4V52|1|DB|C|179
4V52|1|DB|G|180
4V52|1|DB|A|181
4V52|1|DB|A|182
4V52|1|DB|C|183
*
4V52|1|DB|G|214
4V52|1|DB|G|215
4V52|1|DB|A|216
4V52|1|DB|A|217
4V52|1|DB|A|218
4V52|1|DB|A|219
4V52|1|DB|G|220
4V52|1|DB|A|221
4V52|1|DB|A|222
4V52|1|DB|A|223
4V52|1|DB|U|224
*
4V52|1|DB|A|231
4V52|1|DB|G|232
4V52|1|DB|A|233
4V52|1|DB|U|234
4V52|1|DB|U|235
*
4V52|1|DB|A|262
4V52|1|DB|G|263
4V52|1|DB|C|264
4V52|1|DB|A|265
4V52|1|DB|G|266
*
4V52|1|DB|C|426
4V52|1|DB|U|427
4V52|1|DB|A|428
4V52|1|DB|A|429
4V52|1|DB|A|430
4V52|1|DB|U|431
4V52|1|DB|A|432
4V52|1|DB|C|433

Current chains

Chain DB

23S rRNA

Nearby chains

Chain D2

50S ribosomal protein L34